Mycobacterium kubicae: I2456_22220
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Entry
I2456_22220 CDS
T07774
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
mku
Mycobacterium kubicae
Pathway
mku03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mku00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
I2456_22220
09124 Replication and repair
03420 Nucleotide excision repair
I2456_22220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mku03021
]
I2456_22220
03400 DNA repair and recombination proteins [BR:
mku03400
]
I2456_22220
Enzymes [BR:
mku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I2456_22220
Transcription machinery [BR:
mku03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
I2456_22220
DNA repair and recombination proteins [BR:
mku03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
I2456_22220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
QPI37100
UniProt:
A0AAX1J6Q3
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All DBs
Position
4760975..4762624
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AA seq
549 aa
AA seq
DB search
MTDGPLIVQSDKTVLLEVDHDLADAARAAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLVSLDRAVLEEVL
RNKKIAPMLGARIDDDTVVVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHQIDLQPDGW
ELRDYQQMAADSFWAGGSGVVVLPCGAGKTLVGAAAMAKASATTLILVTNVVAARQWKRE
LVARTSLTEDEIGEYSGERKEIRPVTISTYQMVTRRTKGEYRHLELFDSRDWGLIIYDEV
HLLPAPVFRMTADLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAP
AECVEVRVTMTDNERMMYATAEPEERYRLCSTVHTKIAVVKSILAKHPGEQTLVIGAYLD
QLEELGTELNAPVIQGSTRTKEREALFDGFRRGEISTLVVSKVANFSIDLPEASVAVQVS
GTFGSRQEEAQRLGRLLRPKADGGGAIFYSVVARDSLDAEYAAHRQRFLAEQGYGYIIRD
ADDLLGPAI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacggaccgttgattgtgcagtccgataagacggtgctgctggaagtcgaccat
gacttggccgacgccgcacgcgccgccatcgcgccgttcgcggagctggaacgcgcgccc
gagcacgtgcacacctaccgcatcaccccgctggcgttgtggaacgcccgcgccgccggc
cacgacgccgagcaggtcgtcgacgcgctggtcagcttctcccgctacgcggttccccag
ccgctgctggtcgacatcgtcgacaccatggcgcgctacggccgcctgcaactggtgaag
aatcccgcacacgggttgacgctggtcagcctggatcgcgccgtgctcgaggaggtgctg
cgcaacaagaagatcgccccgatgctgggcgcccgcatcgacgacgacaccgtcgtcgtg
caccccagcgagcggggccgggtcaagcagatgttgctgaagatcggttggcccgccgag
gatcttgccggttacgtcgacggcgaagcgcaccagatcgacctgcaacccgacggctgg
gagctgcgcgactatcagcagatggccgcggactcgttctgggcgggcggctcgggcgtg
gtcgtcctgccctgtggcgccgggaagacgttggtgggggcggcggcgatggccaaagcc
agtgcgacgacgctgatcctggtcaccaatgtggtggcggcccggcagtggaagcgtgag
ctggtcgcccgcacgtcgctgaccgaggatgagatcggcgaatattccggagagcgcaag
gagatccgtccggtcaccatctcgacctaccagatggtcacccgtcgcaccaaaggcgag
taccggcatctggaactgttcgacagccgcgactgggggctgatcatctacgacgaggtg
cacctgctgccggcgccggtgttccggatgaccgccgacctgcagtccagacggcgcctg
gggctgaccgccaccttgatccgcgaagacggccgcgaaggcgacgtgttctccctcatc
ggccccaaacgctacgacgcgccgtggaaagacattgaggcacaaggctggatcgcgcct
gccgagtgcgtcgaggtccgggtcaccatgaccgacaacgaacgcatgatgtacgccacc
gccgaacccgaggagcgctaccggctgtgctcgacggtgcacacgaaaattgctgtggtc
aaatcgattctggccaagcatcccggtgagcagaccttggtgatcggcgcctacctcgac
caactcgaggaactgggcaccgaactgaacgctccggtgatccagggctcgaccaggacc
aaggaacgcgaagcgctgttcgacggcttccgccgcggcgagatctccaccctggtggtc
tccaaggtggccaacttctccatcgacttgccggaagcctctgtggcggtgcaggtttcg
gggacgttcggctcgcggcaggaggaggcgcagcggttgggccggctgttgcggcccaag
gccgacggtgggggcgcgatcttctactcggtggtggcgcgcgacagtttggacgccgaa
tacgccgcgcaccggcagcggttcctggccgagcagggctacggctacatcatccgcgac
gccgacgacctgctgggtccggcgatctaa
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