Mycobacterium kiyosense: IWGMT90018_09900
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Entry
IWGMT90018_09900 CDS
T09155
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mky
Mycobacterium kiyosense
Pathway
mky03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mky00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IWGMT90018_09900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mky03021
]
IWGMT90018_09900 (rpoC)
03400 DNA repair and recombination proteins [BR:
mky03400
]
IWGMT90018_09900 (rpoC)
Enzymes [BR:
mky01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IWGMT90018_09900 (rpoC)
Transcription machinery [BR:
mky03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IWGMT90018_09900 (rpoC)
DNA repair and recombination proteins [BR:
mky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IWGMT90018_09900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BDB40544
LinkDB
All DBs
Position
1030144..1034094
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADAKRKVRDGGEREMRQLRDRAQRELDRLDDIWNTFTKLAPKQLIVDENL
YRELQDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEVEGDKGEYR
PAGQDTPESGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAALFGANGWQPGD
AWVAETTLGRVLFNELLPLGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDHYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIIVE
LAERQPDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPSIEALLAAGITQI
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggctaccgcggaggacatc
cgtcagtggtcctacggtgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cctgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtcacccgcgccaaagtgcgtcgggagcggatgggtcacatcgagctggccgctccg
gtcacccacatctggtacttcaagggcgtgccctcgcggttgggctacctgctcgacctg
gccccgaaggacctggaaaagatcatctacttcgccgcgtatgtgatcaccgcggtcgac
gacgagatgcggcacaacgagctgtccacgctcgaggccgagatggtggtcgagcgcaag
gccgtcgaggaccagcgcgacgccgacctggaagcccgcgcgcagaagctcgaggccgac
ctggccgagctggaggccgagggcgccaaggccgacgccaagcgcaaggtccgcgacggc
ggtgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgcgagctggaccggctcgac
gacatctggaacacgttcaccaagctcgctcccaagcagttgatcgtggacgagaacctg
taccgcgagctgcaggaccgctacggcgagtacttcaccggtgccatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggccgagcagttgcgggatgtc
atccgaaacggcaaggggcagaagaagcttcgtgccctcaagcgcctcaaggtggtggcc
gcgttccagcagtcgggcaactccccgatgggcatggtgctcgacgcggtgccggtgatc
ccgccggagctgcgccccatggtgcagctcgacggtggccggttcgccacgtccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgccgcggccggcccgtcacgggtccgggtaaccgtccgctgaag
tcgctgagcgacctgctcaagggcaagcagggccggttccggcagaacctgctcggtaag
cgggtcgactactcgggccgttcggtcatcgtggtcggcccgcaactcaagctgcaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgg
ccccaggtgtgggacgtgctcgaagaagtcatcgccgagcacccggtgctgctgaaccgt
gcacccaccctgcaccggctgggtatccaggccttcgagccgatgctggtggaaggcaag
gcaattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctttcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgagcaacaacatcctgtcgccggcatccggccgcccgctggccatgccgcggctggac
atggtgaccgggctgtacttcctgaccaccgaggtcgagggcgacaagggcgagtaccgg
ccggccgggcaggacacgccggagtccggtgtgtactcctcaccggccgaggcgatcatg
gcggccgaccgcggtgtgctgtcggtgcgcgccaagatcaaggtgcggttgacgcagctg
cgtccgccggccgagatcgaggccgcgctgttcggcgccaacggctggcagccgggcgac
gcctgggtggccgagacgacgctgggccgggtgctgttcaacgaactgctgccgctgggc
tacccgttcgtgaacaagcagatgcacaagaaggtgcaggcgtcgatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtggacaagctcaaggacgccggc
ttctactgggcgacgcgcagtggcgtcacggtctcgatggccgacgtgctggtgccgccg
cggaagaaggagatcctcgaccactacgaggagcgggccgagaaggtcgaaaagcagttc
cagcgtggtgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtgggtcaggcgctgcgggagcactaccccagcgacaacccgatcatc
accatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccggtcaagtcctccttc
cgtgagggcctgaccgtgctggagtacttcatcaacacccacggcgcgcgaaagggcttg
gcggacaccgcgttgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtc
agccaggacgtcatcgtgcgcgagcacgactgcgagaccgagcggggcatcatcgtcgag
ttggccgagcgtcagcccgacggcaccctgatccgtgacccgtacatcgaaacctcggcg
tacgcacggactttgggagccgacgcggtcgacgaggcgggcaacgtcgtcgtcgcccgt
ggcgaggacctgggtgacccgtcgatcgaggcgctgctggccgcgggtatcacgcagatc
aaggtgcgttcggtgctcacctgcaccaccggcaccggcgtctgcgccacctgctacggc
cgctcgatggccaccggcaagctggtcgacatcggtgaggcggtcggcatcgtcgccgcc
cagtccatcggtgagcccggcacgcagctgaccatgcgtaccttccaccagggtggtgtg
ggtgaggacatcaccggcggtctgccgcgtgtccaggagctgttcgaggcgcgcgtcccg
cgcggcaaggcacccatcgccgacgtcaccggtcgggttcggctcgaggacggggagcgc
ttctacaagatcaccatcgtccccgacgacggcggcgaggaagtggtctacgacaagctc
tccaagcgtcagcggctgcgggtgttcaagcacgaggacggctccgagcgggtgctgtcc
gacggcgaccacgtcgaggtgggtcagcaattgatggaaggctcggccgacccgcacgag
gtgctgcgtgtgcagggcccgcgcgaggtgcagatccacctggtccgcgaggtccaggag
gtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgccgggtcaccatcatcgactcgggctcgacggagttcctgcccggctcgctg
atcgaccgtgccgagttcgaggcggagaaccgccgggtggttgccgagggtggcgagccc
gcggccggccgtccggtgctgatgggtatcaccaaggcatcgctggccaccgactcgtgg
ttgtccgcggcgtcgttccaggagaccacccgggtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgaggaggcccgcgcc
gcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggtcaggcc
accggtgccgcggtcccgctggacgactacggttactccgactaccggtaa
DBGET
integrated database retrieval system
