Mycobacterium kiyosense: IWGMT90018_20380
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Entry
IWGMT90018_20380 CDS
T09155
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mky
Mycobacterium kiyosense
Pathway
mky03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mky00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IWGMT90018_20380 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mky03019
]
IWGMT90018_20380 (rne)
03009 Ribosome biogenesis [BR:
mky03009
]
IWGMT90018_20380 (rne)
Enzymes [BR:
mky01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IWGMT90018_20380 (rne)
Messenger RNA biogenesis [BR:
mky03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IWGMT90018_20380 (rne)
Ribosome biogenesis [BR:
mky03009
]
Prokaryotic type
rRNA processing factors
IWGMT90018_20380 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BDB41592
LinkDB
All DBs
Position
2050995..2053946
Genome browser
AA seq
983 aa
AA seq
DB search
MVDGAPPSDTANEPTPHEELPDRLRVHSLARTLGTTSRRVLDALAALDGRVRSAHSSVDQ
VDAVRVRDLIAAQPDTQPEAAAEAAEAQPAEPESRLLLETPETPETPGPAPERPPYMPLF
VAPQPLPERTEPTAAAPAVEEVDEDAEDEVADIADDDEDDQADRPANKRRRRGRRGRGRG
RGEQGGPDGPGENQSQTGEDGTDSDQDQESDDGDGDDADGSDNGDDDNGSGDGASRRRRR
RRRRKSGASEDGDDSPSPDDPPNTVVHERAPRGGKSGSDNGDSSGSGEIKGIDGSTRLEA
KRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPHPGARYTQIAVLED
GIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLG
GADRRIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPD
TERQRLKEILREVVPSNAGVIIRTASEGVKEEDIRGDVTRLQERWNQIDAKAAETKQKAA
GAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDEAWTTINDYVNSVAPDLVSKLTKYEPA
SENAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQ
TVTKNNIEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVS
EVTSLGLVQLTRKRLGTGLIEAFSSSCPQCAGRGILLHADPVDSAPATGRKSESTSRRNR
RSKKNRSDENGEKAVVAKVRVHAPGEHPMFKAMAASARDDDESDESEEDSAGAGEELLPA
DLVAADDADDADFEDSDDSDDEDTDEEDSDDEEDSDDEDDLDDEDLADDDLEDEDEDEDV
EDDESDEIADTEDEDEDDEDSDEDDDSDEDEDDEDSDDDEDEGDEDDTTDTRASVVVVEQ
VSVIGPRRRRAAGRPAGPPIHAD
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacggtgccccaccttcagacacagcaaacgagccgacaccgcacgaggaactg
ccggaccgcttgagagtccattcgctcgcgcgcaccctggggaccaccagcaggcgggtc
ctggatgcgctggccgcgctggacgggcgggtccgcagcgcgcactccagcgtcgatcag
gtcgacgcggtgcgggtgcgcgacctgatcgcggcgcaacccgacacccagcccgaggcc
gccgccgaggccgctgaggcgcagcccgccgagcccgagtcgcggctgctgctcgagacg
ccggagacgccggagacgcccgggcccgcccccgagcggccgccgtacatgccgctgttc
gtcgcaccgcagccgctgcccgagcgcaccgaacctacggctgctgcccccgccgtcgag
gaggtagacgaggacgccgaggacgaggtcgccgacatcgccgatgacgacgaggacgat
caggccgaccgcccggccaacaagcgacgtcggcggggtcgccggggacgtggccgcggt
cgcggggaacagggcggtccggacgggcccggggagaaccagagccaaaccggcgaggac
ggcaccgattccgatcaggaccaagaatccgacgacggcgacggcgacgacgccgacggc
agcgacaacggcgacgacgacaacggttcgggtgacggcgccagtcgccgtcgccggcgg
cgccggcggcgcaagtcgggtgccagtgaagacggtgacgacagcccgtcgccggacgac
ccgcccaacaccgtcgtacacgagcgcgcaccgcgcggcgggaagtcgggttcggacaac
ggcgactcgtccggttccggtgagatcaagggcatcgacggttcgacgcggctggaagcc
aagcgtcagcgccgccgggacggacgcgacgccggccggcgccggccgccggtactgagc
gaggcggaattcctggcccgccgcgaagccgtggaacgggtgatggtggtccgggaccgg
gtgcgcaccgaacctccgcacccaggtgcccgatacacccagatcgcggtgctcgaagac
ggcatcgtcgtggagcactttgtgacgtcggccgcctcggcatcgctggtcggcaacatt
tacctgggcattgtgcagaatgtgttgccctcgatggaggccgcgttcgtcgacatcggc
cgcggccgcaacggcgtgctctacgcgggtgaggtgaactgggaggccgccggcctgggc
ggggcagaccgcaggatcgagcaggcgctcaagccgggcgactacgtggtggtgcaggtc
agcaaggacccggtcggtcacaagggcgcgcggttgaccacgcaggtttccctggccggg
cgctatctggtgtacgtgccgggcgcatcgtcgaccgggatcagccgcaagctgcccgac
accgagcggcaacggctcaaggagatcctgcgcgaggtcgttccgtctaatgcgggcgtc
atcatccgcaccgcatccgagggcgtcaaagaggaggacatccgcggcgatgtcacccgg
ttgcaggaacgctggaaccagatcgatgccaaggccgccgagaccaagcagaaggccgcg
ggcgccgcggtggcgctctacgaagagcccgacgtgttggtcaaggtcatccgggaccta
ttcaacgaagacttctccgggctgatcgtgtccggcgacgaagcctggacgactatcaac
gactacgtgaattccgttgctcccgacctggtttcaaagctcaccaagtatgagcccgcc
agtgagaacgctccggacgtgttcgcggtgcaccgcatcgacgagcagctcgccaaggcg
atggaccgcaaggtgtggctgccgtccggcggcaccctggtgatcgatcggaccgaagcc
atgacggtgatcgacgtcaacaccggcaagttcaccggctccgggggcaacctggaacag
accgtcaccaagaacaacatcgaggccgccgaggagatcgtgcgccaactgcggttgcgc
gacatcggcggcatcatcgtgatcgacttcatcgacatggtgctggagtccaaccgggac
ctggtgctgcgccgattgaccgaggcgctggcccgcgaccgcacccgtcaccaggtgtcg
gaggtgacgtcgctgggcctggtgcagttgacccgcaagcggctgggtaccggcctgatc
gaggcgttttcgagttcctgtccgcagtgcgcgggccgggggattctgctgcacgccgac
ccggtcgactcggcaccggcgaccggccgcaagtccgagtccaccagccggcgcaatcgg
cggtccaagaagaaccgctccgacgagaacggtgaaaaggccgtggtggccaaggtgcgg
gtgcacgccccgggtgagcacccgatgttcaaggcgatggccgcgtccgcccgtgacgac
gacgaatccgatgagtcggaagaggattcggcaggtgcgggcgaagagctactgcccgcc
gacctggttgccgcggacgacgccgacgatgcggacttcgaggactccgacgactccgat
gacgaggacaccgacgaggaggactccgatgacgaggaggactccgatgacgaggatgac
ctcgacgacgaggacctggcggatgacgacctcgaggacgaggacgaagacgaagacgtc
gaggacgacgagtccgacgagatcgccgacaccgaggacgaggacgaggacgacgaggat
tccgacgaggacgacgactccgacgaggacgaggacgacgaggactccgacgacgacgag
gacgagggcgacgaggacgacaccaccgacaccagagcatctgtcgtggtggtcgagcag
gtctccgttatcggcccacgccgccggcgcgcggccggccggccggccgggccgccgatc
cacgctgactag
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