Mycobacterium kiyosense: IWGMT90018_51330
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Entry
IWGMT90018_51330 CDS
T09155
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mky
Mycobacterium kiyosense
Pathway
mky03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IWGMT90018_51330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mky03400
]
IWGMT90018_51330 (mfd)
Enzymes [BR:
mky01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IWGMT90018_51330 (mfd)
DNA repair and recombination proteins [BR:
mky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IWGMT90018_51330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
AAA_22
UB2H
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BDB44687
LinkDB
All DBs
Position
complement(5224635..5228273)
Genome browser
AA seq
1212 aa
AA seq
DB search
MTAPGAASPDTPIAGLVELALTAPTFQQLIERASDRPTELPLVGPASARLFVASALAQLG
PLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGIDTVGSRMMVLRRLAH
PDDERLGPPLRVVVTAVRSLLQPMAPQLGRQEPLTLTVGDEIPFEDVAQRLVELAYTRVD
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVQTLIAV
ACRELLLTPEVKARAGELAKEHPATENTVTGSIIDMLAKLAEGIPTDGMEALLPVLRPDD
HALLTDQLADGTPVLVCDPEKVRTRAGDLIKTGREFLEASWSVAALGTDAPVDVEALGGS
GFAELDEVQTAAAAAGHPWWTLSQLSDEAAVELGIRPAPSARGHQHDIDGIFAMLRAHVA
TGGYAAMVAPGTGTAHRMVERLAESDIAAAMLDPGATPKPGVVGVLKGPLHDGVIVEGAN
LVVITEADLTGSRATAVEGKRLAAKRRNTVDPLALNAGDLVVHDQHGIGRFVEMVERTVG
GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR
KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKSDMEK
PIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV
TVKGLSRFTDPAESRAVIDGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH
KEHIKALRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQI
AAALRRELLRDGQAFYVHNRVSSIDSAAARLRELVPEARVVVAHGQMPEELLERTVQGFW
NRDYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
NAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL
VGEAVEAYKAAADGETVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLASAQDD
AAVESVVEELKDRYGPLPEPADRLVAVARLRLLCRASGITEVSAVSAATVRLSPLTLPDS
AQVRLARMYPGGRYRATTATVQVPIPRAGGIGAGHIRDVELVQMVADLVTALAGKPQQDV
GQSSTPSEERQG
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctagcccagacaccccgatcgcggggctcgtcgaattggcg
ttgaccgcaccgactttccaacagctcatcgagcgtgcctccgatcgccccaccgaactg
ccgctggtcgggccggccagcgcgcgccttttcgtggccagcgcgctggcccaactcggc
ccgctgctggtggtcaccgccaccggccgggaggccgacgacctgaccgcggagttgcgt
ggggtgttcggcgacgcagtggccgtcttcccgtcctgggagacgctgccgcacgagcga
ctgtcgcccggcatcgacaccgtcggcagccggatgatggtgctgcgcaggctggctcac
ccggacgacgagcggctgggtcccccgctgcgcgtggtggtgacggcggtcagatcactg
ctgcagccgatggcgccgcagctgggccgccaggaaccgctgacgctgacggtcggtgac
gagatcccgttcgaggacgtcgcgcagcggttggtcgagttggcctacacccgggtggac
atggttggccgccgcggtgaattcgccgtccgcggcgggattctggacattttcgcgccc
accgccgaacatccggtgcgggtcgagttctggggtgacgagatcaccgagatgcggatg
ttctcggtcgccgaccagcgctcgatcccggagatcgaggtgcagacgctgatcgcggtc
gcctgccgggaattgctgctcacccctgaggtgaaagcgcgtgcgggcgaactcgccaaa
gaacatcccgccaccgagaacaccgtcaccggcagcatcatcgacatgctggccaagctg
gccgagggcatcccgaccgacgggatggaggcgctgctgccggtgctgcgccccgacgat
catgcgttgctcaccgatcagctggccgacggcactccggtgctggtgtgcgacccggaa
aaggtgcgtacccgcgcgggcgacctgatcaagaccggccgggagttcctagaggcgtcg
tggtcggtggcggccctgggcactgacgcgccggtcgacgtcgaagcgctgggcggctcc
gggttcgccgagctggacgaggtccagacggcggcggccgccgcgggccatccctggtgg
acgttgagccagctctccgacgaggcggccgtcgagctcgggatccgcccggcgccgtcg
gcgcgcggacaccagcacgatatcgacggaattttcgccatgctgcgcgcgcacgtggcg
accggcgggtacgccgcgatggtcgcacccggcaccggcaccgcccaccgcatggtcgag
cggctggccgagtccgacatcgccgcggccatgctggacccgggcgccacacccaaaccg
ggggtggtcggcgtcctcaagggcccgctgcacgacggggtcatcgtcgagggcgccaac
ctcgtcgtgatcaccgaagccgacctcaccggcagccgcgccaccgccgtcgagggcaaa
cggctggcggccaagcggcgcaacaccgtcgacccgctggcgctgaacgccggcgacctg
gtggtgcacgaccagcacggcatcggccggttcgtggagatggtcgaacgcaccgtcggc
ggggcccgtcgcgaatacctggtgctggagtacgcctcggcgaagcggggcggcggctcg
gacaagctgtatgtcccgatggactcgctggatcagctgtcccgctacgtcggcggccag
gcgcccgcgctgagccgtctcggcggcagcgactggaccaacaccaaaaccaaggcccgc
aaagcggtgcgggagatcgccggcgagctggtggcgctgtacgccaagcggcaggccagc
ccggggcacgcgttcgccccggacacgccctggcaggccgagatggaggacgcgttcggc
ttcaccgagaccgtcgaccagctcaccgcgatcaccgaagtcaagtccgacatggaaaag
ccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgcccacc
acgctgctggccgaccagcatctgcagaccttcaccgaccggatggccggcttcccggtc
accgtcaagggcctctcccggttcaccgatcccgccgaatcccgcgcggtgatcgacggc
ctggccgacgggtcggtggacgtggtgatcggcacgcaccggctgctgcagaccggggtg
cgctggaaggatctcggcctggtcgtggtcgacgaggagcaacggttcggcgtcgagcat
aaggagcacatcaaggcgctgcgcagccacgtcgacgtgctgaccatgagcgccaccccg
atcccgcgcacgctggaaatgagcctggccggcatccgcgagatgtcgacgatcctcacc
ccgcccgaggagcgctacccggtgctgacctacgttggcccgcacgacgacaagcagatc
gccgcggcactgcggcgcgagctgctgcgcgacggacaggcgttctacgtgcacaaccgg
gtcagctcgatcgactcggccgccgcgcggctgcgcgagctggtgcccgaggcgcgggtg
gtggtcgcgcacggtcagatgcccgaggagctgctggaacgcaccgtgcagggcttctgg
aaccgcgactacgacatcctggtgtgcaccacgatcatcgagaccgggctggacatctcc
aacgccaacaccctgatcgtggagcgcgccgacaccttcggcctgtcccagctacaccag
ttgcgcggccgggtggggcgcagccgggaacggggctacgcctacttcctgtatccgccg
aacgcgccgctgaccgagaccgcctacgaccggttggccaccatcgcgcagaacaacgag
ctgggcgcgggcatggcggtggcgttgaaggacctggagatccgcggcgccggcaacgtg
ttgggggtcgagcagtccggacacgtcgccggcgtcggcttcgacctttatgtgcggctg
gtcggcgaggcggtggaggcgtacaaggccgcggccgacggcgagaccgtcaccaccgcg
gaagagcccaaggacgtgcggatcgacctgccggtcgacgcacacctgccgccggactac
atcgccagcgaccggctccggctggaggcctaccggcggttggcctcggctcaggacgac
gcggccgtggagtcggtggtcgaggaactcaaagaccggtacgggccgttgcccgagccg
gccgaccgcctggtggcggtggcccggctgcggctgctgtgccgggcgtccggcatcacc
gaggtcagcgccgtgtcggcggcgacggtgcggctctccccgctgacgctgccggactcc
gcccaggtgcggctggcgcggatgtacccgggcggacggtaccgggccaccacggctacg
gtgcaggttccgattccgcgggcgggcggtattggcgcgggacacatccgtgatgtcgaa
ttggtgcagatggtggctgacttggtgaccgcgctggcgggcaagccgcaacaggatgtc
ggccagtcgagtacgccgagtgaggagcggcaaggctga
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integrated database retrieval system
