Methanospirillum lacunae: ACKUB0_11030
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Entry
ACKUB0_11030 CDS
T11317
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mlaa
Methanospirillum lacunae
Pathway
mlaa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mlaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
ACKUB0_11030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlaa03019
]
ACKUB0_11030
03009 Ribosome biogenesis [BR:
mlaa03009
]
ACKUB0_11030
04131 Membrane trafficking [BR:
mlaa04131
]
ACKUB0_11030
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mlaa04147
]
ACKUB0_11030
Messenger RNA biogenesis [BR:
mlaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
ACKUB0_11030
Ribosome biogenesis [BR:
mlaa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
ACKUB0_11030
Membrane trafficking [BR:
mlaa04131
]
SNARE
SNARE associated proteins
Others
ACKUB0_11030
Autophagy
Aggrephagy
Other aggrephagy associated proteins
ACKUB0_11030
Exosome [BR:
mlaa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
ACKUB0_11030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
RuvB_N
AAA_16
TIP49
AAA_2
AAA_5
CDC48_2
AAA_14
AAA_22
AAA_33
nSTAND3
AAA_28
AAA_18
RNA_helicase
Mg_chelatase
IstB_IS21
ABC_tran
AAA_7
Parvo_NS1
Sigma54_activat
nSTAND_NTPase5
PhoH
AAA_3
AAA_17
NPHP3_N
AAA_24
TsaE
Zeta_toxin
DUF815
bpMoxR
AAA_lid_PRS2_C
Motif
Other DBs
NCBI-ProteinID:
XLR74600
LinkDB
All DBs
Position
2350331..2352724
Genome browser
AA seq
797 aa
AA seq
DB search
MNQPGGIRLEVKRAAEEDAGKGIARLHQAVMRALGIVNGEFIELLGAKRAVAAAWCTQNA
GHGRNEIAIDGEIRSNAGCGIDDKVLVKRILAHDLHKVVLQPVTGVTLNNPEILLAKKLR
GRPVLEGQTVRIDLIGNTVNFIVSRIEPKGIGVVTFSTEVILHDVPYQTEEVRHDESVIH
YEDIGGLSREISLIREMIEIPLRYPKVFERLGIDPPKGVLLFGPPGTGKTLLAKAVASEV
DAHFVPLSGPEVMSKYYGDSEKKIREIFDSARDKAPSIIFIDEIDSIAPKRQETAGEVER
RVTAQLLTMMDGLASRGQVVVIAATNIPDAIDPALRRGGRFDREIEIGIPDRAGRLEIYH
VHSRTMPLAPDVDLESYAELSYGFVGADIALHCKEAAMHALRGIMVQMKEGQEVPTDVID
NLVISDRDFIEARKSVEPSAMRELYVEVPEVPWDMVAGLDRVKYEIEKVIEWPVKRREAF
EKLKIRPPKGILLFGPPGTGKTLLAKAIAAKSRMNFISIKGPELLSKWVGDSEKQVREAF
RKARQSAPAIIFFDEIDALVQKRGQQSGTSRVGESVLSQILTEMDGIEELKDVIVVAATN
RPDMLDPAILRPGRIEKHIYVPAPDVVAREAILSLYLGDIRELLDPSINLHSLAGQMQYF
VGADIQAFVRELKLIVLEEIFSLDAESAEQYRIRILDDHISRALDAVKGTLGSKTLEGFE
IGAWEILYPSSQRNILMRAAIAVNQADKLNLVSPLPDGVNSMVDELRDLTFWQEKDYSKI
SDLTRDLDLYLKQIREG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcctggtggtatcaggctcgaagtgaagcgtgcagctgaagaggatgcagga
aaaggaattgcccgcctccatcaggcagtcatgcgagcacttgggattgtgaacggagag
ttcatcgagctcctgggcgctaagcgggctgtggctgctgcttggtgtactcagaatgcc
ggtcatggcagaaatgagatagcaatagatggtgagatacggagtaatgctgggtgcggg
attgatgacaaggtcctggtaaaacgaattctggcccatgatcttcacaaagtagttctt
cagccagtaaccggagtcactctgaataaccctgaaattctgctggcaaaaaaactgcgg
ggccgccctgtacttgaaggacagactgtcagaatcgatctgattggaaacacggtcaac
ttcatcgtatccagaattgaaccaaaaggtatcggggttgtcaccttctcaaccgaggtt
attctacacgatgtcccgtatcagaccgaggaggtacggcatgacgagtcggtcattcac
tacgaagacattggtggtctttcccgggagatcagtctgattcgggagatgatcgagatt
cctctccggtacccgaaggtctttgaacgtcttgggattgatccaccaaagggtgttctc
ctcttcggtccaccgggaacaggtaaaactcttcttgcaaaagctgtggcaagtgaagtg
gatgctcattttgtccctctctccggccctgaagttatgagcaagtactatggtgattct
gaaaagaagatccgcgaaatttttgattcagccagggataaggctccatcaattatcttc
attgatgagattgactccattgcacccaaacgacaggagacagccggtgaagttgaacga
cgggtaacagcccaactcctcactatgatggatgggctcgcatcccgtggtcaggtggta
gttattgctgccacaaatattcctgacgccattgaccctgctctcagacggggagggaga
tttgaccgtgagattgagatcgggatacctgaccgggcaggacggcttgagatttaccat
gtccattccagaactatgccacttgctccggacgtggatctcgagtcatatgccgagctc
agctatggttttgttggagcagatatagcccttcactgcaaggaagcggcgatgcatgcc
ctccgtgggatcatggtgcagatgaaggaaggtcaggaggttccaaccgatgtgattgat
aacctcgttatttctgaccgggatttcattgaggcacgaaagtctgtcgaaccttctgcg
atgcgtgaactctatgtcgaagttccggaagttccatgggatatggtagcaggccttgac
cgggtaaaatacgagatcgagaaggttatcgagtggccggtaaaacgcagggaggcattt
gagaaactaaagattcggcctccgaaagggatcctgctctttggaccgcctggaactgga
aaaaccctgcttgcaaaggcaatagcagctaagtccagaatgaacttcatatccatcaag
ggcccggagctcctctcaaaatgggttggagattctgaaaagcaggtcagggaagcattc
agaaaagcccgacaatctgcacctgccattatcttttttgatgagattgatgcccttgtt
cagaagcgtggtcagcaatcaggtacctcacgggtgggagaaagtgtgctttcgcagatc
ctgactgaaatggatggtatcgaggaactaaaggatgttattgtggttgcagcaacgaac
cgtcctgatatgcttgacccggcgatactgagacctggaagaattgaaaagcacatctat
gttcccgctcctgatgttgtggcaagggaggcaattctctcgctttatcttggggatatc
agggaacttcttgatccctctatcaatctccacagtcttgcagggcagatgcagtatttt
gtgggtgctgatatccaggcatttgtcagggaactcaaacttattgttctggaagagatc
ttctcgcttgatgcagaatcagctgaacaatataggatcaggattctggatgatcatata
agccgtgctcttgatgcagtaaaaggaacgcttggaagtaaaacacttgaaggatttgag
atcggagcctgggagatcctgtatccaagttcacagcgcaatattctcatgagagcagcg
attgctgtcaaccaggctgacaagttaaatcttgtttcaccattgcccgatggtgtcaat
tcgatggtggatgaactccgtgatcttaccttctggcaggagaaagattattcaaaaata
tctgacctgacccgtgatcttgatctttatctcaaacagattcgtgaagggtaa
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