Myxococcus landrumensis: JY572_07410
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Entry
JY572_07410 CDS
T09993
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mlan
Myxococcus landrumensis
Pathway
mlan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JY572_07410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlan03019
]
JY572_07410
Enzymes [BR:
mlan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JY572_07410
Messenger RNA biogenesis [BR:
mlan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JY572_07410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
DUF7490
Motif
Other DBs
NCBI-ProteinID:
QSQ15875
LinkDB
All DBs
Position
complement(2053750..2055249)
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AA seq
499 aa
AA seq
DB search
MTFDELQLHDTLLRAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPIL
QRLSAKAPAGGARPVRCLVLTPTRELAGQVGESFMTYGKNLPLRHSVIFGGVGQGAQVQS
LQRGVDVLVATPGRLLDLMDQGYVSLRSLEVFVLDEADRMLDMGFIHDVRKVIKALPSKR
QTLFFSATMPPEIVDLSRNLLTDPVRVEVTPVSSTAETVAQQVFFVEREQKRGLLTHLLK
DGKISRALVFTRTKHGANRVAKQLEGSGVSAAAIHGNKSQNARERALDEFRSGTLRVLVA
TDIAARGIDIDGLSFVINYDLPNVPEQYVHRIGRTGRAGAQGTALSFCDAEERAYLRDIE
RTIRRSVPVVEDHPYRSGVAAPRPGASASVEAPAARGSNPGMHARGGQGGGGGRGNAPGG
NARRRRGGGGGGRGGGGQGRSEGNRSARPGGSGQGGNRSNAQAPRGSGAPAQRPAAAAAP
AKAKAADPLPPRRESPKWL
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgacgaattgcagcttcacgacacccttctgcgcgcagtcaaggcggagggg
tacaccacgccgacgcccatccaagcgaaggcgattccccatgccctggcggggaaggat
gtgctgggggtcgcccagacgggcacggggaagacggcggccttcgcccttccgattctc
cagcggttgtccgccaaggcgcccgcgggtggcgcgcgtcctgtgcgttgccttgtcctc
accccgacgcgcgagctggcggggcaggtgggcgagagcttcatgacgtacgggaagaac
cttcccctgcggcactcggtgattttcggcggcgtgggacagggcgcgcaggtgcagtcg
ctccagcggggcgtggatgtgctggtggcgacgccgggtcgtctgctggacttgatggac
cagggctatgtgtcgctgcgctcgctcgaggtgttcgtcctcgacgaggcggaccgcatg
ctggacatggggttcatccacgacgtgcgcaaggtcatcaaggcgctgccctccaagcgg
cagacgctcttcttcagcgcgacgatgccgccggagattgtggacctgtcgcgcaacctg
ctgacggacccggtgcgcgtggaagtgacgccggtctccagcaccgcggagacggtcgcg
cagcaggtgttcttcgtggagcgtgagcagaagcgcggactcctgacgcacctgctgaag
gacggcaagatttcgcgggcgctggtcttcacgcgcaccaagcacggtgcgaaccgggtg
gccaagcagctcgagggctccggtgtgagcgccgcggcgattcacggcaacaagagccag
aacgcccgtgagcgcgcgctggacgagttccgctcggggacgctccgggtgctggtggcc
acggatatcgcggcgcgcggcatcgacatcgacggcctgagcttcgtcatcaactacgac
ctgcccaacgtgcccgagcagtacgtgcaccgcattggccgcacgggccgcgcgggagcg
cagggcacggcgctgtcgttctgcgatgccgaggagcgcgcgtacctgcgtgacatcgag
cggaccatccggcgcagcgttccggtggtggaggaccatccgtaccgctcgggtgtcgcg
gcgccgcgcccgggggcttctgcttcggtggaggcgcccgcggcccgtgggtcgaacccg
gggatgcacgcgcgaggcgggcagggcggtggcggtggccggggcaatgcgcccggtggc
aacgctcgccgcaggcggggtggtggcggtggtggtcgtggtgggggcggccaggggcgt
tccgagggcaatcgctcggcgcgtccggggggctccgggcagggcggcaatcggagcaat
gcgcaggctccgcgcggttccggtgcgcccgcacagcgtcctgccgccgcggcggctccc
gcgaaggcgaaggcggccgatccgctgcctccgcgacgcgaatcgccgaagtggctgtga
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