Myxococcus landrumensis: JY572_21195
Help
Entry
JY572_21195 CDS
T09993
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlan
Myxococcus landrumensis
Pathway
mlan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JY572_21195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlan03400
]
JY572_21195 (mfd)
Enzymes [BR:
mlan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JY572_21195 (mfd)
DNA repair and recombination proteins [BR:
mlan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JY572_21195 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
DHQS
Motif
Other DBs
NCBI-ProteinID:
QSQ10944
LinkDB
All DBs
Position
5568540..5572136
Genome browser
AA seq
1198 aa
AA seq
DB search
MDTPFTQRLDGEAAAQHGGVPLVAGDTLTRLLAELRPGHRVRTQGLKGSARGHVLARLHR
ETRAPLVCVAADEEAADALASDLAFFLGGTGTLLKPSVLRLPADEVLPYDELSPDAAPVT
ERLGALYHLSRGTRFPVLVISLRALHRRVLRPDVMAALTDRVVVGQDYDRDTLARKLARM
GYQNSPLVEDVGTFSVRGGLLDVFSPLYDKPVRLEFFGDTIDSIRVFDPESQRTVDALKE
VDLVPARELLLTEDTRPRAEAAARAVADRINLPTIQLRERLDALREGLPGFGLEGLLPGL
FEGGLATLFDFLGPWSTQPPIFYLDDPLELSRTADALWDELERTFAAAEERKDLICPPAE
HFLSREAVAEKLAAFRVVEGGGLSLSQSEKPPLLFQLGGTQDLREAILAHHGEEGALSPL
VERMQRWRDSRVACAVACGTLSQADRLKRLLLDRNVMVKVHTEPMTDASALYEPSVWAHL
FTGEVSQGFVDGAGGLAVLSDEEIFGVRARRRVKRSKKLDAFAAGFKDLKEGDLIVHTDF
GIGRYSGLTKMQVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFTGGNPETVQLDKLGTA
SWEKTKKRVKEQLLKMAAELLQIAASRKAHPGHAFSAPDRYFAQFEADFEFDETPDQAKA
IEDVLSDMQKAEPMDRLVCGDVGYGKTEVAMRAAFKATLDRKQVAVLVPTTVLAQQHFLS
FKKRFKDYPVTVEVISGMKKPPEVRDILKRAKEGKVDILIGTHKLLGGEVAFKDLGLMIV
DEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRT
FVMKYDAQVVKEAIEREIARGGQVFFVHNRVESLPSMEQQLRELVPQLSIGVAHGQMGEG
QLEKVMLEFTERKHQVLLCTAIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKE
RAYAYLLVPTRRAVTRDAQRRLEVLQNLTELGAGFSIASHDLEIRGAGNLLGEKQSGAIA
EIGFDMYAQLLEEAVAELQGQPPKVQIEPDVTLPMPALIPDDYVADVHQRLVFYKRFSQA
SHPDEVTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRELRLRGLEVGPQRLVVTLGADA
LLDGPKVAGLVQRSKGYYRLTPDMKLIGRVAQGVQGHDLISEARKVLRDLGHCSLPRN
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggacactcctttcactcagaggctggatggcgaggcggcggcgcagcatggcggcgtg
cctctcgtggcgggtgacaccctcacccggttgctggcggagctgcgccccggtcaccgc
gtgcgaacgcaggggctcaagggctccgcccgaggacacgtgctggcccggctccaccgg
gagacccgcgcgccgctggtgtgcgtcgcggcggacgaggaggcggctgacgcactggcc
tccgacctggcgttcttcctgggtggaacaggcaccctgctgaagccgagcgtgctgcgc
ctcccggccgacgaggtgctcccgtacgacgagctctccccggacgccgcccccgtcacc
gagcggctgggcgcgctgtatcacctgtcccgaggcacccgcttcccggtgctggtgata
tccctgcgcgcgctgcaccgccgcgtgctgcgcccggacgtcatggccgcgctcacggac
cgcgtggtcgtgggccaggactatgaccgcgacacgctggcgcggaagctggcgcggatg
ggctaccagaacagcccgctggtggaggacgtgggcacgttctccgtgcgcggcggcctg
ctggatgtcttcagccccctctatgacaagccggtgcgcctggagttcttcggcgacacc
atcgactccatccgcgtgttcgacccggagtcgcagcgcacggtggatgcgctgaaggaa
gtggacctggtccccgcgcgcgagttgctgctcacggaggacacccgtccccgcgccgag
gccgccgcccgcgccgtggccgaccgcatcaacctgcccaccatccagctccgtgagcgg
ctggatgccttgcgcgagggcctgcccggcttcggcctggaagggctgctccccggactc
ttcgaggggggcctcgccacgctgttcgacttcctgggcccgtggagcacgcagccaccc
atcttctacctggacgacccgctggagctgagccgcacggcggacgcgctgtgggacgag
ctggagcgcacgttcgccgcggccgaggagcgcaaggacctcatctgccctccagccgag
cacttcctctcgcgtgaggcggtggcggagaagctcgccgcgttccgcgtcgtcgagggc
ggtggcctgtcgctgtcccagtcggagaagcccccgctcctcttccaactcggcggcacg
caggacctgcgcgaggccatcctcgcgcaccacggcgaggagggcgcgctgtccccgctc
gtggagcggatgcagcgctggcgcgactcgcgcgtggcgtgcgcggtggcgtgcggaacg
ctgagccaggcggaccggctcaagcggctgctcttggaccgcaacgtcatggtgaaggtg
cacaccgagcccatgacggacgcctcggccctgtatgagccgtccgtctgggcgcacctc
ttcacgggcgaggtgagccagggcttcgtggatggtgcgggcggcctggccgtgctgtcg
gacgaggagatcttcggcgtccgcgcgcgccgccgcgtcaagcgcagcaagaagctggat
gcgttcgccgcgggcttcaaggacctgaaggaaggcgacctcatcgtccacaccgacttc
ggcatcggccgctactcgggcctgacgaagatgcaggtgaacggcgtgcccggggacttc
ctcgtcctcgagtacgcgggccgcgacaagatctacctgccggtgggccgcatgcggctc
atccagaagttcaccggcggcaatccggagaccgtccagctcgacaagctgggcaccgcg
agctgggagaagacgaagaagcgcgtcaaggagcagctgctcaagatggcggcggagctc
ctgcaaatcgccgcttcacgcaaggcgcatccgggccatgccttcagcgcgccggaccgc
tacttcgcccagttcgaggcggacttcgagttcgacgagacgccggaccaggcgaaggcc
atcgaggacgtgctgtcggacatgcagaaggcggagcccatggaccggctcgtctgcggc
gacgtgggctacggcaagacggaggtcgccatgcgcgcggccttcaaggccacgctggac
cgcaagcaggtggcggtgctggtgcccaccacggtgctggcgcagcagcacttcctctcg
ttcaagaagcgcttcaaggactaccccgtcacggtggaggtcatctccggcatgaagaag
ccgccggaggtgcgcgacatcctcaagcgcgccaaggagggcaaggtcgacatcctcatc
ggcacgcacaagctgctgggcggcgaggtggccttcaaggacctgggcctgatgattgtc
gacgaggagcagcgcttcggcgtgaagcagaaggagtcgctcaagaagtggcgctcccag
attgacgtgctgacgctgacggccacgcccatccctcgcacgctgcacatgagcatgtcg
ggcgtgcgcgacatgagcatcatcgccacgccgccgcaggaccggcgcgccatccgcacc
ttcgtgatgaagtacgacgcgcaggtggtgaaggaggccatcgagcgggagattgctcgc
ggcgggcaggtgttcttcgtgcacaaccgcgtggagtcgctcccgtccatggagcagcag
ctccgggagctggtgccgcagctctccatcggcgtggcgcacgggcagatgggcgagggg
cagttggagaaggtgatgctcgagttcaccgagcgcaagcaccaggtcctcctgtgcacc
gccatcatcgagagcggcatcgacatctccagcgccaacacgatgattgtgaaccgcgcg
gaccagttcggcctcgcgcagctctaccagctccgaggacgcgtgggccgctcgaaggag
cgcgcgtatgcgtacctgctggtgcccacgcgccgggcggtgacgcgcgacgcgcagcgc
cggctggaggtgctccagaacttaaccgagctgggcgcgggcttctccatcgccagccac
gacctggagattcgcggcgcgggcaacctcctgggcgagaagcagtcgggcgccatcgcg
gagattggcttcgacatgtacgcgcagctcctggaagaggccgtcgcggagctccagggc
cagccgcccaaggtgcaaatcgagccggacgtcacgctgcccatgcccgcgctcatcccc
gacgactacgtcgcggacgtgcaccagcggctcgtcttctacaagcgcttcagccaggcc
agccaccccgacgaagtcacggacctgcgcgcggagctggtggaccgctacggcgaggcc
cccgacgaggtggaccacctctccgagctcacgctgctgaaaatcgacatgcgcgagctg
cggctgcgcggcctggaagtgggcccgcagcggctggtggtgacgctgggcgcggatgcg
ctcttggacggccccaaggtcgccgggctggtgcagcgctccaagggctactaccgcctc
acgccggacatgaagctcatcggccgcgtggcccaaggcgtccagggacatgacctcatc
tccgaggcgcgcaaggtgctgcgcgacctggggcactgctcgttgcctcgcaactga
DBGET
integrated database retrieval system
