Myxococcus landrumensis: JY572_25250
Help
Entry
JY572_25250 CDS
T09993
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mlan
Myxococcus landrumensis
Brite
KEGG Orthology (KO) [BR:
mlan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlan03016
]
JY572_25250
Enzymes [BR:
mlan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JY572_25250
Transfer RNA biogenesis [BR:
mlan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JY572_25250
Prokaryotic type
tRNA splicing ligases
JY572_25250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSQ11691
UniProt:
A0ABX7MZI2
LinkDB
All DBs
Position
complement(6577905..6579062)
Genome browser
AA seq
385 aa
AA seq
DB search
MSPRLLPAEPGAVPIFVWARKSPPGAEQQLRHIAAQPYVVEHVAAMPDLHVSEGIAVGTV
FATEHHVVPGALGGDLGCGVSAYRFEYPAASLGPDVLRELLERLAQVIPVGDATHRGRGL
ALPSELEAPPLSTQKLRHAWERLAPRHLGTLGGGNHFLELDRDAVGDLWLLVHSGSRGVG
AAISDHHQRVARAMGEGSLPGLRLDTPEGAACLADLELACRFARANRDTLAARALAVLAP
TLEVAPDEASTVDLHHNHVSREWHFGRALWVHRKGAMGLEAGRRGLIPGSMGTASYVVEG
RGEPRAFHSCSHGAGRVLTRREARARIRPAALEQALRRVVHDSGRAASLVEEAPAAYRDI
AEVLEDEADLVTPVRRLTPMAVLKG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctcgactcctccccgcggagccgggcgccgtgcccatcttcgtctgggcgcga
aagtctccaccgggcgcggagcagcagctccgtcacatcgccgcgcagccgtatgtcgtc
gagcacgtggccgcgatgccggacctccacgtctccgagggcatcgcggtgggcaccgtc
ttcgccaccgagcaccacgtcgtgcccggcgcgctgggcggggacctgggctgcggcgtg
agcgcgtaccgcttcgagtatcccgccgcctcgctgggccccgacgtgctgcgggagctg
ctcgagcggctggcccaggtcatccccgtgggcgacgccacgcaccggggccggggcctc
gcgcttccctctgagttggaggcgccgccgctgtccacccagaagctgcgccacgcctgg
gagcggctcgcgccgcgacacctgggcacgctggggggaggcaaccacttcctcgaactg
gaccgggacgcggtgggcgacctctggctgctcgtgcactccggctcgcgcggcgtgggc
gcggccatctcggaccaccaccaacgtgtggcccgggcgatgggggagggcagtctgccg
gggctccgtctggacactccggagggggccgcctgcctcgcggacctggagctcgcctgc
cgcttcgcccgggccaaccgcgacacgctggccgcgagggccctggccgtcctggctccg
acactggaggtggcgcccgacgaggcgtcgacggtggacctccaccacaaccacgtgtcc
agggagtggcacttcggccgggccctctgggtgcatcgcaagggggccatgggcctggag
gcggggcggcgcgggctcatcccgggctccatgggcaccgcctcctatgtggtggagggc
cggggggagcctcgcgccttccactcctgctcccacggcgctggccgcgtcctcacccgg
cgggaggcccgtgcacgcatccgccccgccgcgctggagcaggccctgcgtcgcgtggtg
cacgactccggccgcgcggcgtccctcgtggaggaggcccccgccgcctaccgcgacatc
gccgaggtgctcgaggatgaggcggacctcgtcacccctgtgcggcgcctgacacccatg
gccgtcctcaagggctga
DBGET
integrated database retrieval system
