Myxococcus landrumensis: JY572_39910
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Entry
JY572_39910 CDS
T09993
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mlan
Myxococcus landrumensis
Brite
KEGG Orthology (KO) [BR:
mlan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlan03016
]
JY572_39910
Enzymes [BR:
mlan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JY572_39910
Transfer RNA biogenesis [BR:
mlan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JY572_39910
Prokaryotic type
tRNA splicing ligases
JY572_39910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSQ14399
UniProt:
A0ABX7N6L0
LinkDB
All DBs
Position
10160846..10162081
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AA seq
411 aa
AA seq
DB search
MNRDQVSYEVLSDEAGRPIKSWTVGVPFEDEAKKQLRNVRGLPFIHKWVAVMPDVHRGYG
ATVGSVVPTVGAVVPAAVGVDIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDN
GGRNDVGAWRVAPASHQQAWARLVEGYDRIVGKHPRIGRGPELAHLGTLGTGNHFIELCL
DESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWYINLPDADLAYLPEGTEHFDDYVF
AVSWAQDFAATNREMMLKGAVEALQLSGELPPFELSDSAVNCHHNYVAREHHFGKNCFVT
RKGAVRAREGDLGIIPGSMGARSYIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTLEDH
EKATAGIECRKDVDVIDETPAAYKSIDAVMAAQADLVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcgatcaggtgagctacgaggtgctgtcggacgaggcgggtcgccccatcaag
tcgtggacggtgggtgtgccgttcgaggacgaggccaagaagcagctccggaacgtgcgt
ggcctgcccttcatccacaagtgggtggcggtgatgccggacgtgcaccgcggctacggc
gcgacggtggggagcgtggtgccgacggtgggcgcggtggttccggcggcggtgggtgtg
gatatcggctgcggcatgattgcggtccgcacgacgctgcgcgccgaccagctgccggac
tcgctgcgtggggtgcgctcggccatcgagcgggcggtgccgcatggccgctcggataac
ggcggccgcaacgacgtcggcgcgtggcgtgtggcgcctgcttcgcatcagcaggcgtgg
gcgcgattggtcgaagggtatgaccgcatcgtcggaaagcacccgcgcatcggccgtggg
ccggagctggcgcacctgggaacgctcggcacgggtaaccacttcatcgagctgtgtctg
gacgagtcggatggcgtgtggctgatgttgcactccggttcgcggggcgtgggtaaccgc
atcgggagctacttcatcgagctggcgaaggaggacatgcgccgctggtacatcaacctc
cccgacgcggacctggcgtatctgccggagggaacggagcacttcgacgactacgtcttc
gcggtgagctgggcgcaggacttcgcggcgacgaaccgcgagatgatgctgaagggcgcg
gtcgaggcccttcagctcagcggtgagctgcctccgttcgagctgtccgactcggcggtg
aactgccaccacaactacgtggcgcgtgagcaccacttcggaaagaactgcttcgtgacg
cgcaagggagcggtgcgggcgcgcgagggtgacctcggcatcatccccggcagcatgggg
gcgcgttcgtacatcgtccgtgggaagggaaacgcggacagcttccattcttgcagccac
ggcgcgggccgggtgatgtcgcgtgaggcggcgaagcggcgcttcacgctcgaggaccac
gagaaggcgacggcgggcatcgagtgccgcaaggacgtggatgtgattgacgagacgccg
gctgcgtacaagtccatcgatgcggtgatggcggcgcaggcggacctggtcgaagtggtc
cacacgctgaagcaggtcgtctgcgtgaaggggtag
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