Macrotis lagotis (bilby): 141500960
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Entry
141500960 CDS
T11097
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mlao Macrotis lagotis (bilby)
Brite
KEGG Orthology (KO) [BR:
mlao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mlao03041
]
141500960 (YTHDC2)
Enzymes [BR:
mlao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141500960 (YTHDC2)
Spliceosome [BR:
mlao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141500960 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
ATPase
PhoH
AAA_16
AAA_7
Ank_4
AAA_29
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
141500960
NCBI-ProteinID:
XP_074060666
LinkDB
All DBs
Position
X:complement(209069937..209144015)
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AA seq
1432 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGGVPAQCGSGGGGGRAKGLKDIRIDEEVKIAVNIALERFRY
GDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCS
LTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIP
VKRGESEFDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDCFKNG
IPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLR
TLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIR
YFGSCPVIYIQGRPFEVKEMFLEDILRSTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQ
ENSIKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWL
HKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFLSQVEQLISMGANVHSKAS
NGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQANGSDLNAEDRELLKAYHHS
FDDEKVDLDLIMHLLYNICHSCDSGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQV
FMLHSNMQTSDQKKVLKNPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALN
YVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCL
HTKLLAPINCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVE
PHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHM
ALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDI
RDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIP
PANGQAAALQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVSVFCGPARLASNALQEPS
SFRVDGVPNDSSDSEMEDRTTANLAALKLDEWLNFKMDPEAASLLLQLRQKWHSLFLRRM
RAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNS
RKSSADTEFSDDSSNAERVLMKSPSPAFHPPQKYKDRGILHPKRSSDDRSDQSSVKSTDS
SSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNER
KLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKES
LPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERIPLGEKNATD
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggcccccggccccgggcggcggcggcggcggc
ggcgtccccgcgcagtgcggctccggcggcggcggcggccgagccaaggggctgaaggac
atccgcatcgacgaggaggtgaagatcgccgtcaacatcgccctggagcgctttcgttac
ggagatcagcgggaaatggaatttccttcttctttaaccagtactgaaagagcttttatt
catcgattaagtcagtctcttggtttggtctctaaaagcaaaggaaaaggagcaaataga
tacctaactgtgaaaaagaaggatggatcagaaacagcacatgcaatgatgacctgtagt
ttgactcacaatacaaaacatgctgttaggagtctaattcaaagatttccagttacaaat
aaagagcgtacagaacttctgcctaaaacagaacggggaaatgtatttgcagttgaagct
gaaaaccgagaaatgagcaagacaagtggacgactgaacaatggaatacctcaaattcca
gtaaaaaggggagaatcagaatttgattcttttagacagtctttaccagtgtttgagaag
caagaagaaattgtcaaaataattaaagataataaggtagttttgattgttggagaaact
ggatcaggaaagaccacacagattcctcaattccttttagatgactgcttcaaaaatgga
attccctgccgtatattttgtactcaaccaagacgcttagcagctattgctgtggctgaa
agagttgcagcagaaagaagagaaaagattggccagacaattggctatcagatacgatta
gaaagcagagtttctccaaagactcttctgacattttgcaccaatggagtgttacttcgc
acattaatggcaggagatagcacactatcaactgtgacacatgttattgtggatgaagtg
catgaaagagatcgatttagtgattttttattgacaaaattaagagacttgttgcagaag
catccaactttgaaactgattctttctagtgctgcattggatgtgaatctctttataaga
tattttggaagttgcccagtgatatacatacagggaagaccatttgaagtaaaagagatg
tttctggaagatattttaagaagtacaggatacacaaacaaagaaatgttaaaatacaaa
aaggaaaaacagcgagaagagaaacagcaaactactcttactgaatggtattcagctcaa
gagaatagcatcaaacctgaatctcaaaggcaaagaactgttccaaatgttactgaagaa
tatgatttattggatgatggtggtgatgctgtgttcagtcagctgactgaaaaagatgtg
aattgccttgaaccgtggctaataaaagaaatggatgcttgtctttctgacatatggctg
cataaagatgtcgatgcctttgctcaggtgtttcatcttattttaactgaaaatgttagc
gtggattacagacacagcgaaaccagtgcaacagcactaatggttgctgcaggaagaggg
tttttgagtcaagtagagcagttaattagtatgggagccaatgtccatagcaaagcatca
aatggctggatggctttagattgggctaaacactttggacagactgagattgttgatctt
ctggaatcttacagtgcttcattggagtttggaaatttagatgaaagttctttagtccaa
gcaaatggaagtgatctcaatgcagaagacagagaattattgaaagcatatcatcatagc
tttgatgatgaaaaagtggacttggatttgatcatgcatcttctttataacatctgccat
agctgtgattctggagcaatcttaattttcctgcctggctatgatgaaattgttggactg
agggatcgcattctgtttgatgacaagcgttttgcagataatacacataggtatcaagtc
tttatgcttcattcaaatatgcaaacatctgatcaaaaaaaggtactaaaaaatccaccc
tcaggtattcggaaaataatcctttctaccaatattgcagaaaccagcattacagtcaat
gatgttgtctttgttattgattctggcaaagtgaaagagaaatcctttgatgccctgaat
tacgttacgatgctaaaaatggtgtggatttcaaaagccagtgctatccaaagaaaaggc
agggcggggcgatgtaggcctggaatctgttttcgtctatttagcagacttcgatttcag
aacatgttggaatttcagactccagaacttctgagaatgcctctgcaggagctttgttta
cataccaaactattagcaccaattaattgtcccattgctgactttcttatgaaagcccca
gaacctccaccagctttgattgttagaaatgctgtacagatgctcaagacaatagatgcc
atggatacctgggaagatctgactgagcttggatatcatttggctgacttgccagtagaa
cctcaccttggtaaaatggtcttgtgtgctgtcgttttgaagtgtctggaccccatcctt
actattgcttgtactttagcatatagagatcctttcgtgctacccacacaagcttctcaa
aagcgtgcagccatgctgtgtaggaaacgttttactgcaggcacctttagtgaccatatg
gcgcttctgagagcttttcaggcatggcaaaaagcaagaagtgatggctgggaacgagct
ttttgtgaaaaaaattttctttcacaagctactatggaaattatcattggcatgagaact
cagttgcttggtcagcttagagcatcaggttttgttagagcacgaggtggtggtgacatt
cgcgatgttaacacaaactctgagaactgggctgttgttaaagctgcattggtggcaggc
atgtatcctaatttagttcatgtggacagagaaaatgtagtattgacaggaccaaaggaa
aaaaaagtacggtttcatccaacttctgttctcagtcaacctcaatataaaaagattcct
ccagccaacggccaagcagcagctcttcaagcacttcccacagattggcttatatatgat
gaaatgaccagagcacatagaatagccaatatccgatgttgctcagctgtaacacctgtc
actgtttctgtattttgtggaccagctaggttggcaagtaatgctcttcaggaaccttct
tcttttagagtggatggtgttcctaatgacagcagtgacagtgaaatggaagatcgaacc
actgctaatttggctgcattgaaactggatgaatggttaaatttcaaaatggatccagag
gccgccagcttattgctacaactcagacagaaatggcatagcttatttttgcgccgaatg
agagctccttccaagccttggtctcaagttgatgaagcaactataagagcaattatagct
gttttaagcacagaagaacaatctgcaggattgcagcaaccatcagggattggccaacga
ccaagaccgatgtcttcagaggaacttcctttggcatcttcttggaggtcaaataatagc
aggaaaagttcagcagatactgaattctctgatgattcttctaatgcagaaagagtcttg
atgaagtctccatcaccagctttccacccaccccagaaatacaaagatagaggtatttta
catcctaaacgaagctctgatgatagatctgaccaatcttctgtgaaatctacagatagt
agtagttatcctagtccttgtgccagtccttctcctccatcctcaggaaagggctcaaaa
tccccttcaccaagaccaaatatgccagttcgatacttcataatgaagagtagcaatctg
agaaatcttgagatttctcagcagaagggtatatggtctacaacccctagcaatgaacgg
aaattaaatagagccttttgggagagcagcatggtttatttggtgttttctgttcaagga
tctggacattttcagggattttctaggatgtcttcagagataggacgggaaaagagtcag
gattggggctcggcaggtctgggaggagtcttcaaggtggaatggatacggaaagaaagt
cttccttttcagtttgcacaccatttactcaatccttggaatgacaataagaaagtacaa
ataagcagagatggacaggaattggagccccaagttggagaacaacttttacagttatgg
gaacgtattcctctcggagagaaaaatgcaactgattga
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integrated database retrieval system
