Macrotis lagotis (bilby): 141508408
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Entry
141508408 CDS
T11097
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mlao Macrotis lagotis (bilby)
Pathway
mlao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141508408 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlao03021
]
141508408 (PCF11)
03019 Messenger RNA biogenesis [BR:
mlao03019
]
141508408 (PCF11)
Transcription machinery [BR:
mlao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141508408 (PCF11)
Messenger RNA biogenesis [BR:
mlao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
141508408 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
141508408
NCBI-ProteinID:
XP_074073109
LinkDB
All DBs
Position
1:811732325..811765954
Genome browser
AA seq
1696 aa
AA seq
DB search
MSEPAPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPTPSTVV
SSPGISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSV
QHGVSNIVPGSAPSKLLVSQIPPMAVKTSHQVSAQPEKSRPSSSSSSQLQDMKVTNRDPR
LNRISQHSSHGKEQSHRKDFLVNTMNQPDIKANKSVPTDKQNSSKQEKSKSSEKITKKEL
DQSDTKSKSKSPSPLKNKFSHTKDIKNQESESGRGVPEMSKRDPRLKKHLQDKPDGKDDD
SKEKRKSSEKKDKEEHGKSSEHRLTGGRNKIINGIVQKQDAGTEESEKQGTKTGRSSTRK
RSRSRSPKSRSPITHSPKRRDRRSPKRRQRSISPSTSTPKTGKLRQSGVKQSHVEEFTQV
SRDERNSNKRSAKQDTRDPRRVKKTQEERPQETVNQHSTKSGSEPKENVENWQSSKSTKR
WKSGWEENKSLQQGEEHQGLSKPPHLRHRENWGSNKGILSSRAPKQQHRLSVDANLQIPK
ELTSASKRELLKKANDSLTSGEITQDEFLVVVHQIRQLFQYQEGKHRCNVWDSPTEENKG
GLKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEPSK
SKHTGRSSGAQFDRKEQFSERSRRLSPISGSRTYAENLSPHDGRRRHEEQVSAKGVREEQ
RSPFSERFALKRPRYEDSDKPFADGPASRYSSLDTTNQRLTALAEDRPLFDGPSRPSVAR
GDGPTKMIFEGPNKPNPRIDGPPAPASLRFEGSQGQIGGGGPMRFEGPQGQLGGGCPLRF
EGPQGPGGTPLRFEGPLGQAGGGGLRFEGAAGLRFEGPTGGMRFEGPAGQSVGGLRYEGP
RGQPVGGLRFEGPHGQPVGALRFENPRGQPVGALRFEGSHGASGSGIRFEGPHGQPGGGI
RFEGPLLQQGSGMRFEGPHGQSVAGLRFEGQHNQLGGSLRFEGPHGQPGVGVRFEGPLVQ
QGSGMRFEGPSVQGGSMRFEGPLGQGGPRFEGCHASRFDGQPGQPSLLPRFDGLHGQPGP
RFERTPGQQGPQRFDGPPGQQVQPRFDTGPQRFDGPQHQQASRFDIPLGLQGARFDNHPS
QRLDAVSFNQTGPYNDPPNNAFNAPSQGMQFQRHEQMFDTPQGPNFNGPHGPGAQGFSNP
LNRASGHYFDEKNLQGPQFGNFSNLPTPIAVGNIQPSQQVLSGVTQPVNFGQGQQFLPVH
PQNPGTFVQNPAGALPRAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVATQ
PPPEEEEEDQSEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYA
DHLDWHYRQNRTEKDVSRKVTQRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLK
TQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCY
EDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKKELQEPCDSSKVKEEPVDVPPACTDESV
ATSTEIKTEPDTVESV
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccggcgccggccgaggccggcaccgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtccctggaagacctgaccttcaacagtaaaccgcacatcaatatgctg
accattctggccgaggagaacctgcctttcgccaaggagatcgtctccctcatcgaggcc
caaaccgccaaggctccttctacagagaagctcccagttatgtatcttatggattctatt
gtgaagaacgttggaagagagtatcttactgcctttactaaaaacctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgacattttccctttgaagaaactctatgccttggatgtcagagttaattca
ttagatcctgcctggccaattaagcctctaccccccaatgtgaatacttctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagcctcctacacctagcacagtggtc
agttcccctggtatctccactcctccaattgtccctgatatccaaaagaatttgacccaa
gaacaactgataaggcaacaattgctggcaaagcaaaaacagttgttagaacttcagcag
aaaaaattggagctggagcttgaacaaactaaggcacagctggcagtttctcttagtgtt
cagcatggggtatctaacatagtccctggatcagcaccttccaaattacttgtttcacaa
attccacccatggcagttaaaacttctcatcaggtttctgcacagcctgaaaagagtcga
ccctcttcctcctcatcctcacagctccaggatatgaaagtaacaaacagagatcctcgt
cttaatcggattagccaacattcttctcatggtaaagagcaaagtcacaggaaagatttt
ctagtaaatacaatgaatcaaccggatatcaaagcaaataaatctgtacctactgataag
caaaactcatcaaagcaagaaaaaagtaaatcaagtgaaaaaatcacaaagaaagaactt
gaccagtcagatactaaatctaaatctaaatctccttcacctttgaaaaacaaattttct
catacaaaagatataaaaaatcaggaatctgaaagtggtcgaggggtacccgaaatgagc
aaaagagatccccgattaaaaaaacacctccaggataagcccgatggtaaagatgatgac
tcaaaagagaagagaaaatcttcagaaaaaaaagataaagaagagcatgggaagtcatct
gaacacagactcactggaggtagaaataaaattataaatggcattgtacagaaacaagat
gctggtactgaagaatcagaaaaacaagggacaaaaacaggaaggtcaagtactagaaaa
cgatctcgatcacgatctcccaagtctcgatcaccaatcacacattctccaaaaaggaga
gataggcgttcacccaaacgaaggcaaaggagcatttctccttctacttctacgcccaaa
actggaaaacttcgccaatcaggagttaaacagtcacatgtagaagaatttacacaagtt
tctcgtgatgaaagaaattctaataagagaagtgctaagcaagacacccgagatcctagg
cgagtaaaaaagactcaagaagagagaccacaagaaactgtaaatcagcattctacaaaa
tcaggatctgaaccaaaggagaatgtggaaaactggcaaagctctaagtctacaaaaaga
tggaaatctggttgggaggaaaataaaagcttacaacagggtgaagagcatcagggactt
agtaaaccacctcatctaaggcatagagagaattggggcagtaataaaggaattttatca
tctcgggcccccaaacaacaacatcgattaagtgtagatgccaatcttcagattcctaaa
gaattaacttctgcaagcaaaagagaattacttaaaaaggcaaatgatagtttaacatct
ggtgaaattacacaggatgaattccttgttgttgttcatcagattcgtcagctctttcag
tatcaagaaggaaaacacagatgcaatgtatgggatagccctacggaagaaaataaaggt
ggattaaaaaagaaacctctcttatctgatgctgaattaacatattatgagcataaagct
aaactcaaaaggacacaggttcagcattcatttcctagacttgatctcttggatcctgat
atttttgattaccatttgactgatgctttgttgtctggaatagaatgtgaaccgtccaaa
agtaaacatacaggtaggagtagtggagcacagtttgaccgaaaagaacaatttagtgaa
agatcaaggcgactttctccaatatctggaagccgtacttatgcagagaatctttccccc
catgatggccgaaggaggcatgaagagcaagtctctgctaaaggtgtccgagaggagcaa
aggtctccattcagtgagcgttttgcacttaagaggcctagatatgaagattcagataaa
ccatttgcagatggcccagcatcgagatattcaagcctcgatacaacaaatcagagactt
acagcattagctgaagacagaccattatttgatggaccttctagaccatctgtggcaagg
ggagatggcccaactaaaatgatttttgaaggacccaataagccaaaccctagaattgat
ggacctccagcaccagcttctcttcggtttgaaggctcacagggacaaatagggggaggg
ggacctatgaggtttgaaggaccacaaggtcagctaggaggtgggtgtcctttgagattt
gaaggtcctcaaggaccaggagggactcctttgaggtttgaaggaccacttggacaggca
ggaggaggtggcttaaggtttgaaggagctgctggcttacggtttgagggtcccacaggt
ggtatgaggtttgagggtccagctggccagtctgtgggtggtcttagatatgaaggtccc
cgtggtcaacccgtgggtggtcttaggtttgagggacctcatggtcagccagtaggagct
ctaaggtttgagaatccccgaggtcagcctgtcggggcactcagatttgaggggagccat
ggtgcatcgggaagtgggattaggtttgaggggccccatggtcagccaggcggtggaatc
agatttgaaggccctttgcttcagcagggcagtggtatgagatttgagggtccccatggc
cagtcagtggcaggtctgagatttgaaggacaacataatcaacttggtggaagccttcga
tttgaaggaccacacggtcagccaggggttggggttagatttgaaggacccttagttcag
cagggaagtggaatgagatttgagggtccttctgtacaaggaggtagtatgagatttgaa
ggacctctaggtcaaggtggtccaagatttgaggggtgtcatgcttcaagatttgatggt
cagccaggtcagccatctcttttgccaagatttgatggcttgcatggtcaacctggtcct
agatttgaaagaactcctggtcaacaaggcccacaaagatttgatgggcctcctggtcag
caggtacaaccaagatttgatacaggacctcaaagatttgatgggccacaacaccagcaa
gcatctagatttgatattcctcttggtcttcaaggtgcaaggtttgacaatcatccttca
cagaggcttgatgcagtctcttttaatcagactggtccatataatgaccctcctaataat
gcatttaatgcaccatctcaaggaatgcaattccaaaggcatgagcaaatgtttgataca
cctcagggaccaaattttaatggaccacatggccctggagcacaaggtttctcaaatcca
cttaacagagcatctggacattattttgatgaaaagaatcttcagggtcctcagtttgga
aactttagtaatctgcccacaccaattgcagtaggaaatattcagccatctcaacaggtt
ctctctggtgttactcagcctgtaaattttggacaaggacaacagtttttaccagttcat
ccacaaaatcctggtacttttgttcagaatccagcaggtgctcttccaagagcataccct
gataatcatctcagccaggtggatgtgaatgaacttttctctaaactgttaaaaacagga
atacttaaattatcccagcctgattcagcaacaactcaagtaaatgaagttgctacacag
cccccgcctgaggaagaagaagaggatcaaagtgaagatcaagatgttcctgacctcact
aatttcacagttgaagaactgaaacagcgttatgatagtgttataaatcgattatatact
ggtatccagtgttattcttgtggaatgaggtttacaacatctcagactgatgtatatgca
gaccatttggattggcattaccgacaaaatagaactgaaaaggatgttagcagaaaagtt
actcaaaggaggtggtactacagtctaacagactggatagaatttgaggaaatagctgat
ttggaggaacgtgcaaagagccagttctttgagaaggtacatgaagaggttgtgttgaaa
actcaagaagctgctaaagaaaaggagtttcaaagtgttcctgctggaccagctggggca
gtagagagctgtgaaatatgtcaggagcaatttgaacaatactgggatgaagaagaagag
gaatggcatctaaaaaatgctatccgagtagatggaaagatttaccatccatcatgttat
gaagattatcaaaatacatcttcatttgattgtacaccatctcccagcaagacacctgtt
gaaaatcccttgaatattatgttgaacattgtcaaaaaggaattgcaggaaccctgtgac
agttccaaagttaaagaagaaccagttgatgttccaccagcttgtacagatgagagtgta
gctacatctactgaaattaaaacagaacctgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
