Macrotis lagotis (bilby): 141513436
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Entry
141513436 CDS
T11097
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
mlao Macrotis lagotis (bilby)
Pathway
mlao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141513436 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlao03019
]
141513436 (SMG5)
03032 DNA replication proteins [BR:
mlao03032
]
141513436 (SMG5)
Messenger RNA biogenesis [BR:
mlao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141513436 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
141513436 (SMG5)
DNA replication proteins [BR:
mlao03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
141513436 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
141513436
NCBI-ProteinID:
XP_074079331
LinkDB
All DBs
Position
2:163534259..163564539
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AA seq
930 aa
AA seq
DB search
MGGKQRSYCGGRCTTRLSSISRPTKRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHV
TDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTEHLAERFYYQALS
VAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQL
KKCEMRKLSPSKKRCKDIKRLLVSFMYLQSLLQPKSSTLDLELTSLCQSVLEDFNLCLFY
LPSSPNLSLASEDEEEYENGYSFLPDLLIFRMVIICLMSVHSLKRAGSKQYSAAIAFTLA
FFSHLINHVNIRLQAELEEGENPVPAFQSDGTDEPEPKEPLEKEVEPEPEPPPPAPRVSE
AKKSRKFSRLSCLRRRRHHPPKAGDDSDLSEGFDSDSSHDSARASEGSDSGSDKSDEGGG
TAFDAETDSEMNSQESRSDLEDMEDEEGTRPMAPDPPRSRSEASDPSNGPLGPNEASIAS
NLQAMSTQMFQTKRCFRLAPTFSNILLQPSNETRTTAGSRACINGDLDKPEPASDDGSES
EESVSSGRSCHNERSIQEKLHILMAEGLLPAVKVFLDWLRTNTDLIIMCAQSSQSLWNRL
SVLLNLLPAAGELQEPSLILCPEVQDLLLGCERPDLPTSLLLPEDTALRNLPPLRVAHKR
FNFELDRPLLNPMEESVVRICCIRSFGHFITHLQGSILQFNPEVGIFISIAQAEQEDLLQ
QAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQ
HLPIIRQLASSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKEL
GKSFERHKLKRQDIDAWTLYKILDSCKQLTLAQGIGEDDPSGMVTIITGLQMDDPSTFSS
SMQAAVQAATHASVEIKNVLDFYKQWKEIG
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaaagcagaggagctactgtggaggaaggtgtactacgaggttatccagcata
tcaagaccaacaaaaaggacacacttggttgctggtattggcttctaccagcatctcctc
ctctacatccagtcccactaccagcttgaactgcaatgctgcattgactggactcatgtc
accgaccctctaataggttgtaagaagccagtatctgcctcagggaaagagatggactgg
gctcagatggcttgccaccgatgtctggtgtatctgggagatttgtcccgatatcagaat
gaattagctggtgtggacacagagcatctggctgagagattctattaccaagccttgtca
gtggctccccagataggtatgcccttcaatcaactgggtaccctggcaggcagcaagtat
tataatgtagaagccatgtactgctacctgaggtgtatccaatcagaagtgtcctttgag
ggggcttatgggaacctcaaacggctatatgacaaagcagccaaaatgtaccaccagctg
aagaaatgtgagatgagaaaactgtctcctagcaaaaagcgatgtaaggacatcaagaga
ttgttggtgagcttcatgtatctgcagagtcttctgcagcccaagagcagtaccctggac
ttggagctgacatcactctgccaatcagtcctggaggacttcaacctttgcctcttctac
ctaccttcttcacctaacctcagtctggctagtgaggatgaggaagagtatgagaatggt
tattcttttcttcctgaccttctcatcttccggatggtcatcatttgcctcatgagtgtt
cacagcttgaagagagcaggatcaaagcaatacagtgctgccattgccttcaccctagct
ttcttctctcatcttatcaaccacgtcaatatccggctacaggcagagctggaagaggga
gagaatcctgtaccagcattccagagtgatgggacagatgagcctgagcccaaagaacca
ctggagaaggaggtcgaaccagagccagagcctcctcctccagcaccgagagtgagtgag
gccaagaagagtcgtaagttctcccgcctgtcttgccttcgtcggcgacgccaccaccca
cctaaggctggtgatgacagtgacctgagtgaaggctttgactcagattcaagccatgac
tcagcccgggccagtgaaggttcagacagtgggtcagataagagtgatgagggtgggggt
acagcttttgatgcagagacagactcagagatgaacagccaggagtcacgctcagacctg
gaagacatggaagatgaagagggaacaaggcctatggccccagatccacctcgatccagg
tcagaagcttctgacccctccaatggcccattgggtccaaatgaggccagtattgccagt
aatctacaagccatgtccactcagatgttccaaaccaaacgctgcttccgattggccccc
accttcagtaacatccttctccagccttctaatgaaactcggaccactgctggtagtagg
gcctgcatcaatggagacctggacaaacctgaaccagcatctgatgatgggtctgagtca
gaggaaagtgtgtccagtggacgctcctgtcacaatgaaaggagcatccaggagaaactt
cacatcttgatggcagaaggacttctacctgctgtgaaagtcttcctggattggcttcgg
accaacactgacctcatcatcatgtgtgcacagagctcccaaagcctatggaatcgcctc
tctgtattattgaatctcctgccagctgctggagaactccaggagcctagcttgatcttg
tgccctgaggtacaggatctccttctgggctgtgaacgacctgaccttcccacttccctg
ctgctcccagaagacacagctctccgcaacctacccccacttcgagttgctcataaacgc
ttcaactttgaactggatcgacccttgctcaatcctatggaggagtctgtcgtgcgaatc
tgctgcatccgtagttttggccatttcattacccatctgcaaggcagcatcctacagttt
aatcctgaggttgggatctttatcagcattgctcaggctgagcaagaggatcttttgcag
caagcccaggcccagttcaggatggcccaggaagaggctcgaaggaatcgattgatgagg
gacatggctcaacttcgactgcagctcgaggtgtcccagttagagggcagtttgcagcag
cccaaagctcagtcagcaatgtccccatacctcgttcctgacactcaggctctttgccag
cacctccccatcatccgccagctggccagcagtggcaggttcattgtcatcatccctcgg
acagtgatagatggcttagacttgctgaagaaagaacatccaggagctcgagatggaatc
cgctacctggaagctgagtttaaaaaaggaaacaggtacattcgatgccagaaagagttg
gggaagagttttgagcggcataaactgaagaggcaggatatagacgcctggactctgtat
aaaatcctggacagttgcaaacaactgactctggcccagggaattggagaggatgaccct
agtggcatggtgaccatcatcactggtcttcagatggatgatcccagtactttctccagt
tccatgcaggcagcagtacaagcagccacccatgccagtgttgagatcaagaatgtgctg
gacttctacaagcagtggaaggagattggctga
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