Macrotis lagotis (bilby): 141515321
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Entry
141515321 CDS
T11097
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mlao Macrotis lagotis (bilby)
Brite
KEGG Orthology (KO) [BR:
mlao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlao03016
]
141515321 (RTCB)
Enzymes [BR:
mlao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
141515321 (RTCB)
Transfer RNA biogenesis [BR:
mlao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
141515321 (RTCB)
Prokaryotic type
tRNA splicing ligases
141515321 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
141515321
NCBI-ProteinID:
XP_074082883
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All DBs
Position
2:complement(325517682..325533674)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagctccagttcctggacaagatccacaagaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggtggaaggagtgttctatgtgaatgat
ccacttgagaagttaatgtttgaggagttaagaaatgcctgccgaggtgggggtgttggt
ggcttcctgccagcaatgaaacagattggcaacgtggcagccctacctgggattgtccat
agatctattgggcttcctgatgtccattctggttatggatttgctattgggaatatggct
gcctttgatatgaatgacccagaagccgtggtgtccccaggtggtgtcggatttgacatc
aactgtggcgtccgtctgctgagaaccaaccttgatgaaagcgatgtccaacctgtgaag
gaacagctcgcccaggccatgtttgaccacattcctgttggggtgggatcaaaaggggtt
atcccaatgaatgcaaaggatttggaggaggctctggagatgggggtagactggtctcta
cgagaaggctatgcttgggcagaagacaaggagcactgcgaggagtatgggcgaatgctg
caagctgaccccaataaggtctccgccagagctaaaaagagaggccttcctcagcttggg
accctaggagcaggaaatcattatgcagaaatccaagttgtggatgagatttttaacgag
tacgctgctaagaagatgggtattgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagaggcctgggccatcaagtagctacagatgccctagtggctatggaaaaagca
atgaagagagacaagattatcgtaaatgaccgccagttagcgtgtgctcggatcagctcc
cctgaggggcaggactacctgaagggcatggcggctgccggaaactacgcctgggtcaac
cgctcctctatgacgttcctgacccgacaggcttttgccaaggtcttcaacacgacccct
gatgacttagacctccatgtgatctatgacgtctcccacaacatcgctaaggtggagcag
catgtggtggatggcaaagaacgaaccctgctggtgcacaggaagggttccacccgggcc
ttccctccacaccaccccctcattgctgtggattaccagctaaccggacagccagtcctc
attgggggaaccatgggaacctgcagttacgttcttacagggactgagcagggcatgacc
gagacctttggaacaacctgtcacggagccggccgcgcattgtcccgagcaaaatctcga
cgaaacctagacttccaggatgttttagataaactggctgatatgggcattgccatccga
gttgcctccccaaaactggtgatggaagaggctccagagtcctataaaaatgtgactgat
gttgtgaacacttgccatgatgccgggatcagcaagaaagccattaaactgagaccgatc
gctgtgatcaaaggctga
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