Macrotis lagotis (bilby): 141518140
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Entry
141518140 CDS
T11097
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
mlao Macrotis lagotis (bilby)
Pathway
mlao05016
Huntington disease
mlao05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mlao00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
141518140 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
141518140 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlao03019
]
141518140 (HTT)
04131 Membrane trafficking [BR:
mlao04131
]
141518140 (HTT)
03029 Mitochondrial biogenesis [BR:
mlao03029
]
141518140 (HTT)
Messenger RNA biogenesis [BR:
mlao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141518140 (HTT)
Membrane trafficking [BR:
mlao04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
141518140 (HTT)
Mitochondrial biogenesis [BR:
mlao03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
141518140 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
141518140
NCBI-ProteinID:
XP_074085968
LinkDB
All DBs
Position
3:complement(220336028..220558937)
Genome browser
AA seq
3116 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQPPPPPPPPPPQAQAAQQPPPPPPPQPGPEEPAPRPKKE
LSTTKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECL
NKVIKALMESNLPRLQLELYKEIKKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLP
CLTRISKRTEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAA
GSAVSICQHSRRTQYFYTWLLNVLLGLLVPVEEEHSTLFILGVLLTLRYLIPLLQQQVKD
MSLKGSFGVTRKETEVSPSLDQLIQVYELTLHYTQHQDHNVVTGALELLQQLFKTPPAEL
LQALTTAGGIGQVNVTKEEFTSRSRSGSIVELIAGGGSSCSPVLSRKQKGKVLLGEEEGL
EDDPDSRSEVSSATFAASMKSEITGELASSSGVSTPVSTSSAADSTGHDIITEQPRSQHT
LQSDPVDLTGCDLTSAATDGDEEDILSRSSSQISAVPSDPIMDMNDGTQASSPVSDSSQT
TTEGPDSAVTPSDSSEIVLDGAESQYSGMQIGQLQDEDDESSHVLPDEAPDNFRNSTIAL
QQSHLLKSTGHSRQPSDSSVDKFLSKDETETGDHESKPSRIKGDIGHFTDADSAPLVHCV
RLLSASFLLTGEKGALVPDRDVRVSVKALAVSCVGAAVALHPESFFSKLYKTPLETMEHP
EDQYVSDVLNYIDHGDPQIRGATAILCGTIIYSILNKSRFSVENWLAVVRNSTGNTFSMV
DCIPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSCYSELGLQLIIDVLTLRNSSYWLVR
TELLDTLAEIDFRLVSFLEAKARHLHKGSHHYTGLLKLQDRVLNNVVIYLLGDEDPRVRH
IAAASLIRLVPKLFYNCDQGQTDPVVAVARDQSSVYLKLLMHETQPPSHFSVSTITRIYR
GYNLLPNITDVTMENNLSRVIAAVSHALTISTTRALTFGCCEALCLLSTAFPVCIWSLGW
YCGVPLLNPSDESRKSWTVGMATTILTLLSSAWFPLDLSAHQDAIILAGNLLAASAPKSL
KNPWTTEDETNPGAMKQEEPWPALGDRMLVTMVEQLFSHLLKAINICAHVLDDVTPGPAI
KAALPSLTNPPSLSPIRRKGKEKEPGEQTSVPLSPKKGNEASPASRSSDPSGPAITSKSS
SLGSFYHLPSYLKLYDVLKATHANYKVTLDLQNSNEKFGAFLRAALDVLSQILELATLQD
IGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFGTNLASQYDGLSSKPSKSQGKAQRL
GSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDTSGWFDVLQKVSTQLKTNL
TSVTKHRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLL
DSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCD
GIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVAVSMLLRLIQYHQVL
EMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSS
LRPVDMLLRSMFVTPSTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYL
ISCQVIKKLRDGGSSLPTPEDQSEVKQVKYLPEETFSRFLLQLVGILLEDIVTKQLKVEM
TEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSELVRS
MIPTHPSLVLLWCQILLLVNYTNYSWWSEVHQTPKRHSLSSTKLLSPQMSSDGEDSRLAS
TLGVCNREIVRRGALILFCDYVCQNLYDSEHLTWLIVNHIQDLINLSHEPPVQDFISAVH
RNSAASGLFIQAIQSRCENLSSPTTLKKTLQCLEGIHLSQSGAVLMLYVDKLLCTPFRVL
ARMVDTLACRRVEMLLAANLQNSMSQLPVEELNRIQEYLQKSGLAQRHQRLYSLLDRFRR
TVAPETASPSPVVTSHPLDGENHLSLEMINPDQDWYVSLVKSQCCTKSDSALLEGAELVN
RIPPGELAPFMMNKEFNLSLLAPCLSLGVREFSGGQSSSLFETARLVTLDRVTSLVQQLP
SNHHVFQPLLSIEPSAYWNQLSELFGNAVIYQSITTLACALAQYLVLFSKLPNHLQLPPE
KESDVLKFVVMALEALSWHLIHEQMPLSMDLQAVLDCCCLTLHLPGLWSTLSSVDYVTHV
CSLIHCVRFILEAIAVQPGDQLLSPERRKNTPRGISEDEVDSDVQIPKYITTACEMIAEM
VAALQTVLALGHKRNSAIPAFLTPVLKNIVISLARLPLVNSYTRVPPLVWKLGWSPKPGG
DFGTTLPEIPVEFLQEKEIFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPIVMDQEE
SQQEEDTERTQINVLAVQAITSLVLSAMTLPVAGNPAVSCLEQQPRNKALKALDTRFGRK
LSVIRGIVEQEIQAMVSKRDNIPTHHLYQAWDPVPSLSPAMSGALISHEKLLLQINTERE
MGNMSYNLGQVSIHSMWLGNNITPLREEEWDEDEEDEGDLPAPSSPPTSPINSRKHRAGV
DIHSCSQFLLELYSQWILPSSSAKKTPVILISEVVRSLLAVSDLFTERNQFEMMYLTLTE
LRRVHPSEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLETTLRSTHLPSKIGALHGI
LYVLECDLLDETAKQLIPIISDYLLSNLRGIAHCVNLHSQQHVLVTCAAAFYLMENYPLD
VGPEFSAAVIQMCGVMLSASEESTPSIIYHCVLRGLERLLLSEQLSRLDAESLVKLSVDR
VNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPNPTAPDSESVIVAMERVSVLFDRIR
KGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHTT
GQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWVSAILPHIISRMGKSEQV
DINLFCLVAVDFYRHQIDEELDRRAFQSVFEVVASPGNPYHRLLTCLQNVHKIATC
NT seq
9351 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctggagaagctgatgaaggcgttcgagtcgctcaagtccttccagcagcag
cagcagccgccgccgccgccgccgccgccgccgccccaggcgcaggcggcccagcagccg
ccgccgccgccgccgccgcagcccgggccggaggagccggcgccccgaccaaagaaagaa
ctttcaactactaagaaagaccgggttaatcactgcctgacaatatgtgaaaacatagtg
gctcagtctctcagaaattctccagaatttcagaaacttttaggcattgctatggaactc
tttcttctgtgcagtgatgatgcagaatcggatgtcagaatggtagctgatgaatgtctc
aataaagttataaaagctttgatggaatccaatcttcccagattacaattagagctctat
aaggaaataaaaaagaatggagcttctcgaagtctgagagctgctctctggaggtttgct
gaacttgcccatctggttcgacctcagaaatgcagaccatatttggtaaaccttttacct
tgtcttactcgaataagcaagcgaacagaggaatctgtacaagagactttggcagctgct
ataccgaaaattatggcatcttttggcaactttgcaaatgacaatgaaattaaggtatta
ttaaaagcttttatagctaatctcaagtcaagttctcctacaattcggcgaacagcagct
ggatcagcggtgagcatctgtcaacattcaaggaggacacagtatttttatacctggtta
cttaatgtacttttaggcttactagttcctgttgaggaggaacattctactctttttatt
cttggagtgttgcttactttgaggtatttaattcccttgctccaacagcaagtcaaggac
atgagtttgaaaggcagttttggtgtcacccgaaaagaaactgaagtctcaccttctcta
gaccagctcatccaggtatatgaattgactttgcattacacccagcaccaagaccacaat
gttgtaactggagcattagaactattacagcaacttttcaaaacacctccagctgagctt
cttcaagccctgaccactgcaggtggtattggacaggtcaatgtgaccaaagaagagttc
actagcagaagtcgaagtgggagtattgtggaacttatagctggaggggggtcttcatgc
agccctgttctttcaagaaagcaaaaaggtaaagtgctcttaggagaagaagaaggctta
gaagatgacccagattcaaggtctgaagttagcagtgccacatttgcagcctcaatgaag
agtgaaatcacaggtgaattggcttcttcatcaggtgtatcaactcctgtctccacaagt
tcagctgctgattccacaggtcacgacatcatcactgagcagcccaggtcacagcacact
ttacagtcagaccctgtcgatttgaccggctgtgacttgacaagtgccgccactgatggg
gatgaagaggatattcttagtcgcagctcaagccaaataagtgctgtcccatctgaccct
ataatggacatgaatgatgggacccaggcgtcatcaccagttagtgatagttcacagaca
actacagaaggtccagattcagctgtgaccccttcagatagttctgaaattgtattagat
ggtgctgaaagccagtactcaggaatgcaaattggacagttacaggatgaggatgatgag
tcttcacatgtccttcctgatgaggctccagacaatttcagaaactctactattgcactt
cagcagtcccatctcttgaaaagcactggacatagcagacagccatctgacagcagtgtt
gacaaatttttatcaaaagatgaaacagagacgggtgatcatgaaagcaagccttctaga
atcaaaggagatattggacacttcaccgatgctgattcagcacctctagtccattgtgtt
cggttgttatctgcttcttttttgctcacaggagaaaaaggtgcattggttccagatagg
gatgtaagggtcagtgtgaaggctttggcagtaagttgtgttggagcagctgtggccctt
catccagaatctttttttagcaaactttacaaaacaccactggagaccatggaacaccca
gaggatcagtatgtctcagatgttttgaattatattgatcacggagacccacagattcgt
ggagcaactgctatcctttgtgggaccattatctactccattcttaataaatctcgtttc
agtgtggaaaactggttagccgttgtcagaaattcaacaggtaataccttttctatggta
gactgcatccctttattgcagaaaactttgaaagatgagtcttctgttacctgcaaactg
gcttgcactgctgtgaggcattgtgtcatgagtttatgcagcagttgctatagtgaatta
ggattgcaattgatcattgatgtcttgactctgagaaatagttcctactggttggtaagg
acagaacttttggatactcttgcagaaattgactttaggttagttagctttttggaggca
aaagcacgccatttacacaagggatctcatcattatactgggcttttaaaactgcaggat
cgagtgctcaacaatgttgtcatttacttacttggagatgaagatcctcgggtgaggcat
attgctgctgcttctttaataaggcttgttccaaaactgttttataattgtgaccaagga
caaactgatccagttgtggctgtagcaagggaccaaagtagtgtctacctgaaacttctt
atgcatgaaactcagcctccctctcatttttcagtcagcactatcacgagaatatacaga
gggtacaacttacttccaaacataactgatgtgacaatggaaaataacctttctagggtt
attgcagcagtttcccatgcattgacgatatcaactactcgagcacttacatttggctgt
tgtgaagctttgtgtcttctttctactgcctttccagtctgcatatggagtcttggatgg
tattgtggggttcctctactgaatccttctgatgagtctaggaagagctggacagttggg
atggccacaacaatccttaccctcttgtcctcagcctggtttcccctggatctgtcagca
catcaagatgcaatcattttagctgggaatttgcttgcagctagtgctcccaaatcattg
aaaaacccgtggacaacggaagatgaaaccaatccaggagccatgaaacaagaagagcca
tggccagctttgggagaccgaatgttggttacaatggtagaacagctcttttctcatttg
ctgaaagccattaacatctgtgctcatgtgttggatgatgttactcctgggccagcaata
aaggcagctttaccctctctaaccaacccaccttctttaagtccaatccgtcggaaagga
aaagaaaaagaaccaggagagcagacctctgtaccattaagtcccaaaaaaggcaatgaa
gctagtccagcttctagatcttctgatccctctggacctgctataacaagtaaatcatca
tcactgggaagtttctatcatcttccttcttatctcaagttatatgatgttctaaaagct
actcatgctaactataaggttacattggatcttcagaatagcaatgaaaagtttggggca
tttctgcgggctgccttggatgtcctctcacagattcttgagctagcgaccctgcaggat
attggcaagtgtgttgaagaaatcttgggatacctgaaatcctgtttcaatagagaacct
acaatggctacagtttgtgttcaacagttgttgaagactctttttgggacaaatttggca
tcacagtatgatggcttatcttccaaacccagcaaatctcaaggaaaagcccagcgtttg
ggttcttctagtttgcgtcctggcctttatcattattgcttcatggcaccatatacgcac
tttacacaggctttggctgatgctagtttgagaaatatggtccaagcagaacaagaacat
gatacttctgggtggtttgatgtgctccaaaaagtgtctacacaattgaaaaccaatctt
acaagtgtgacaaaacaccgtgcagataagaatgctattcacaatcacattcgtttattt
gagcctcttgtcataaaggctttaaaacaatataccacaacaacatctgtgcaattgcag
agacaggttctagatttactggcacaactggttcagttacgagttaactactgtcttctg
gattctgatcaggtgtttattggatttgtgttaaagcagtttgaatacattgaagtgggc
cagtttagggaatcagaggcaattatcccgaacatctttttcttcttagtattgttgtct
tatgagcgctatcactcaaagcagatcattggaattccaaaaatcattcaactctgtgat
ggcatcatggccagtgggaggaaagctgtaacacatgctataccagctctgcagcccata
gttcatgatctctttgtgttaagaggaacaaacaaagcagatgctggaaaagagcttgag
acgcaaaaagaagtggctgtgtccatgttattaagacttattcagtaccatcaggtccta
gagatgttcatcctagtcctacagcagtgtcacaaggaaaatgaagacaaatggaagaga
ttatctcgacaaatagctgacatcattctcccaatgttagcgaaacaacagatgcatatt
gattcccatgaagcccttggagtattgaacactttatttgaaatattggctccttcatcc
ctacgtcctgtagacatgctattacgaagtatgtttgttactcccagtacaatggcatca
gtaagtacagttcagttgtggatatcaggcatcctagctattctgagagtgcttatttcc
cagtcaactgaagacattgttctttctcgaatccaagaactctctttctctccttattta
atctcatgtcaagtaattaaaaaattaagagatggaggtagtagcttgccaacaccagaa
gatcaaagtgaagtgaaacaagtcaagtatttgccagaagaaacattttccagattcctc
ctacagctggtgggcattctgctggaggacattgtgacaaagcaactgaaagtggagatg
acagagcaacagcacaccttctactgccaagaactgggcacgctgctgatgtgcctgatc
cacatcttcaagtcaggaatgttcaggagaattactgcagctgccactagactctttaca
ggtgatggctctgatggcagcttttataccctggaaagcctcagtgagctggtacggtcc
atgattcccacacatccttctttggtgctcctatggtgtcagatcctgctgctggtcaac
tacaccaactacagctggtggtccgaagtgcatcagaccccaaaaaggcacagcctttcc
agtacgaagctcctcagccctcagatgtctagtgatggtgaggactcccgcttggcatcc
acacttggcgtgtgcaatagagagatagttcgaagaggcgcactcattcttttctgtgat
tatgtttgtcagaatctatatgattcagaacatttaacttggcttattgtgaatcatatt
caagatttgatcaatctttctcacgaacctccagtacaagactttattagtgcagtccac
aggaattcagctgctagtgggcttttcatccaggcaattcagtcgcgctgtgaaaacctt
tcatctccaacaaccttaaaaaagacactgcagtgcttagaggggattcacctcagccag
tcgggggctgtgctcatgttgtacgtggacaagcttttgtgtacgccattccgtgtgctg
gctcgcatggttgacacacttgcttgtcgtcgagtagaaatgcttttggctgccaactta
cagaacagcatgtcacagttacctgtggaagaactgaatagaattcaggaataccttcaa
aaaagtggattagctcagagacaccaaagactttattccctgctggacaggtttcgtcgt
acagtagccccagagacagctagcccttctcctgtagtcacttcacaccccctggatggg
gaaaatcacttgtcactagagatgataaatccagaccaagactggtatgtgtctctagtc
aaatctcagtgttgcactaagtcagactcggcactgctggaaggtgcagagctggtaaat
aggattcctcctggtgaactggcccccttcatgatgaataaggagttcaacttatccctc
ttagcaccttgcttaagtcttggtgtccgtgaattttctggtggtcagagtagcagcctc
tttgagacagcccggttagtgacccttgaccgtgtgaccagcctggtgcagcagcttcca
tccaaccatcacgtttttcaaccccttttatcaattgagccttcagcctactggaatcag
ctaagcgaactctttggaaatgctgtgatttatcagtccattactacactggcttgtgca
cttgcccagtacttagtactattttctaagttaccaaatcatcttcaacttccccctgaa
aaagagagcgatgttctgaaatttgtggtgatggcacttgaggccctgtcatggcacttg
atccatgagcagatgccattaagtatggatcttcaggctgtcctggattgctgctgcctc
actctgcatctgcctggtctttggagtacgttatcatcagtggactatgtcactcatgtg
tgctccctaattcactgtgttcgttttattctagaagcaattgcagttcaacctggagac
caacttcttagtccagaaaggaggaagaatactccaagaggaatcagtgaagatgaagtt
gattcagatgtgcagattcccaaatatattaccactgcttgtgaaatgatcgcagaaatg
gtggcagcattgcagactgtgctggctttgggtcacaagaggaacagtgcaattccagct
ttccttactcctgtgctgaaaaacattgtcatcagccttgcgaggctgccactagtcaac
agctacactcgagtgcctcccttggtatggaagttaggatggtctcctaaacctggaggg
gattttggtactacacttccagaaattcctgtagaatttcttcaagaaaaggagatcttt
aaagagttcatctatcgtattaataccttaggatggacaagtcgtactcagtttgaagaa
acatgggccaccctgcttggagtccttgtaactcagccaattgtgatggatcaagaagaa
agtcaacaggaagaagatactgagaggacccagatcaatgttcttgcagtacaagctatc
acatccttggtgctcagtgccatgacccttcctgttgctggcaaccctgctgtgagctgc
ttggagcagcagccacggaacaaagcccttaaagctctggataccaggtttgggagaaaa
ctgagtgttatcaggggaattgttgagcaagaaattcaagcaatggtatcaaagagagac
aacattcccactcatcacttataccaggcttgggatcctgttccatctctgtctccagct
atgtcaggtgcccttatcagccatgaaaaacttctgctgcagatcaacactgaacgagaa
atggggaacatgagttataatctaggccaggtctctatacattctatgtggctgggaaat
aatatcactcctctgagggaagaagaatgggatgaagatgaagaagatgagggcgacctt
cctgccccttcttcaccaccgacatctccaataaattccaggaaacaccgggctggagtt
gatatacattcttgttcacagtttttgcttgaattgtacagtcagtggatactcccatca
agttcagccaaaaaaactccagtcattctgattagtgaagtggtgagatcgctcctggca
gtctcagacttgtttacagagaggaatcaatttgagatgatgtacttgacgctgacagag
cttcgcagagtgcatccttcggaagatgaaattctcctgcagtatttagtaccagccact
tgtaaagcagccgctgtcctgggcatggataaagctgtggctgagccagtgagcaggctg
ttggaaaccacgctgcgaagcacccatttgccaagcaagattggagcacttcatggcatc
ctctatgtacttgaatgcgacctgcttgatgaaactgcaaagcagctgattccaattatc
agtgattatctcctttctaatctcagaggaattgctcattgtgtaaatctgcacagccag
cagcatgtgctggtgacctgtgctgctgccttctacctgatggagaattatcccctcgat
gtaggcccagagttttctgctgcagtaatacagatgtgtggagtgatgctctctgccagt
gaagaatccactccatccattatctatcattgtgtcctgagaggtttagaaagacttctt
ctttcagagcagctctccaggctggatgcagagtccttggttaagctcagtgttgaccga
gtgaatgtgcacagtcctcaccgagccatggcagccctgggcctgatgttaacctgcatg
tatacaggaaaggagaagatcagccctggcagaacctcagaccccaatcccactgctcca
gacagtgaatcggttattgttgcaatggagcgcgtgtctgttctctttgataggatcaga
aaaggatttccctgtgaagccagagtggtggcacgcatccttcctcagtttctagatgat
tttttccctccccaggatgtaatgaacaaagtcattggagaatttctatcaaaccagcag
ccctacccacaattcatggcaactgttgtctataaggtgtttcagacactgcataccacc
ggacaatcatctatggtacgagactgggtgatgctctctctctcaaacttcactcagagg
accccggttgccatggcgatgtggagtctctcctgtttttttgtcagtgcttccactagt
caatgggtttcagcaattcttccacacatcatcagcagaatggggaagtcggagcaagtg
gacattaatcttttctgtctggtggccgtagacttttataggcaccagatagatgaggag
ctagatcgcagggcctttcagtctgtgtttgaggtggtggcatctccaggaaatccctac
caccggctgctgacttgtttgcaaaatgtccacaagattgcgacatgttga
DBGET
integrated database retrieval system
