Macrotis lagotis (bilby): 141523502
Help
Entry
141523502 CDS
T11097
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mlao Macrotis lagotis (bilby)
Pathway
mlao03013
Nucleocytoplasmic transport
mlao03015
mRNA surveillance pathway
mlao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141523502 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
141523502 (DDX39B)
03015 mRNA surveillance pathway
141523502 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlao03019
]
141523502 (DDX39B)
03041 Spliceosome [BR:
mlao03041
]
141523502 (DDX39B)
Enzymes [BR:
mlao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141523502 (DDX39B)
Messenger RNA biogenesis [BR:
mlao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141523502 (DDX39B)
Spliceosome [BR:
mlao03041
]
Complex C
Other components
EJC/TREX
141523502 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141523502 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141523502
NCBI-ProteinID:
XP_074092827
LinkDB
All DBs
Position
5:8873662..8882773
Genome browser
AA seq
498 aa
AA seq
DB search
MRGTVEEEEVLESRFLYLASARWRPGKGVWWKGERERGDRKWRPLSSVAAAAATRRVSSR
LRHSPPPEPAMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDF
LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV
TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV
GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT
LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQV
VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG
MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN
ISELPDEIDISSYIEQTR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgggacggttgaggaggaggaggtcctcgagtcacgcttcctgtacttagcgtct
gcgcgttggcgtcctggaaagggagtgtggtggaaaggggagagggaacgcggggaccgg
aagtggaggccgctttcctcggtcgccgctgctgccgccaccagacgcgtttcttcccgg
ctcaggcattcccctccccctgagccagccatggcagagaacgatgtggacaacgaactc
ctggattatgaagatgatgaagtggaaacagcagctgggggggatggagctgaggcccct
gcaaagaaagatgtgaaaggttcctatgtctccatccacagctctggcttccgggacttt
ctacttaagccagagttgctccgagccattgtagattgtggttttgagcatccatctgaa
gtccagcatgagtgtattcctcaggccatcttgggaatggatgttttgtgccaggccaag
tcaggcatgggaaagacagctgtgtttgtgctggccacgctgcagcaactggaaccagtc
actggtcaggtttctgtgctggtaatgtgtcacacacgggagctggcctttcagatcagt
aaggaatatgagcgtttctccaaatatatgcccaatgtcaaggtggcagtgttttttggc
ggtctatcaataaaaaaggatgaggaggtactgaagaagaactgcccacacattgtcgtg
ggtaccccgggtcgtatcttggccctggcccgaaataagagcctcaatctcaaacacatt
aaacattttattttggatgagtgtgacaaaatgctcgaacaactcgacatgcgtcgggat
gtccaggaaattttccgcatgaccccccatgagaagcaggtcatgatgttcagtgctacc
ctgagcaaagagatccgccctgtctgccgcaagttcatgcaagacccaatggagatcttc
gtggatgatgagacgaaactgacgctgcatgggctgcagcagtactacgtgaagctgaag
gacaatgagaagaaccgaaaactcttcgacctcctggacgttctggaatttaaccaggtg
gtgatcttcgtgaaatctgtgcagcgctgcattgccctggcccagcttctagtggaacag
aactttccagccattgccattcatcgtgggatgccccaagaggagaggttgtcccggtat
cagcagttcaaagattttcagcgtcgtattcttgtggccactaacctttttggccggggc
atggatattgaacgagtaaacattgcattcaactatgacatgccagaggattcagacaca
tacttacacagggtggctagggcaggtcggtttggtacaaagggtttggccatcacattt
gtgtcagatgaaaatgatgccaaaatcctcaatgatgtccaggatcgcttcgaggtcaac
atcagtgaactgcctgatgagatagacatttcttcctatattgagcagactcggtag
DBGET
integrated database retrieval system
