Methylomicrobium lacus: ACEPPP_00280
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Entry
ACEPPP_00280 CDS
T10917
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mlau Methylomicrobium lacus
Pathway
mlau03410
Base excision repair
mlau03430
Mismatch repair
mlau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ACEPPP_00280 (recJ)
03430 Mismatch repair
ACEPPP_00280 (recJ)
03440 Homologous recombination
ACEPPP_00280 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlau03400
]
ACEPPP_00280 (recJ)
DNA repair and recombination proteins [BR:
mlau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ACEPPP_00280 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ACEPPP_00280 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACEPPP_00280 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
QSregVF_b
Motif
Other DBs
NCBI-ProteinID:
XGK39725
LinkDB
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Position
67942..69684
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AA seq
580 aa
AA seq
DB search
MYHQGIKKTIINRPLTQKHLPVEGLHPLLERIFLARGVMSPDDLDRSLAKLPSPWLLAGI
EKLVTQLITALEQQQKIVIVADFDADGATSCAVAIKGLQLFGAKRVSFVVPNRFEYGYGL
TPEIVELVKLENPDLIITVDNGISSLEGVNVAKQAGIKVLVTDHHLPGEQLPAADAIVNP
NLPDDKFPSGALAGVGVMFYCLLALRSRLRETGWFQAKGLPDPNLGQLLDYVALGTVADV
VELDRINRTLVHQGLLRIRMGKAHPGIHALIEVAGRKAATLSASDLGFALGPRLNAAGRL
DDMSLGIQCLLSDDPEEARQIAQQLDDLNNGRKEIEGQMKHEAMSLLNEMRALDESRLPA
GVCLFDQNWHQGVIGILASRIKDRLHRPVIAFAPAGKDQIKGSARSIPGIHIRDVLSDIA
AAHPNLLSKFGGHAMAAGMSIAMHDYPPFALAFDEMVRKRLDAVDLEQKVLSDGELGEKE
MTVEFAELLQNAATWGQGFPEPIFHGEFEVVQASIVGQKHLKLVLRNSGGFLIDAIAFFI
DHPEKWLGLRACRAAYKLDINEFRGNRSVQLIVQYLEKTA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtaccatcaaggcatcaagaaaaccatcatcaaccgtccgttgacgcaaaaacatctg
cctgtcgaaggtctgcaccctttgctcgaacgcatttttttggcccgtggcgtgatgtca
ccggatgatctggaccgctccctggccaagttgccgtcgccgtggctcctggccggcatc
gaaaagctggttacgcagctgatcaccgcgttggaacagcagcaaaaaatcgtgatcgtc
gccgatttcgacgccgacggcgcgaccagttgcgcggttgcgatcaagggactgcaattg
ttcggcgccaaacgcgtcagttttgtggtgccgaatcgcttcgagtacggctacggtctg
acgcctgaaatcgtcgaactggtcaaactcgaaaatccggatctgatcatcacggtcgat
aacggcatttccagcctcgaaggcgtcaatgtcgccaaacaggccggcatcaaggtgttg
gtgaccgatcaccatttgccgggcgagcaactgccggccgccgatgcgatcgtgaatcct
aacctgcccgacgacaaattcccgagcggcgcattggccggcgtcggcgtgatgttttat
tgcctgttggcgctcagaagccggctccgggagaccggctggtttcaggccaagggcttg
cccgatccgaatctcggccagttgctcgactacgtagcgctcggcacggtcgccgacgtg
gtcgagctcgaccgcatcaaccgcacgctggtgcatcagggcttgctcagaatccggatg
ggcaaggcgcatcccggcatccacgcgctgatcgaagtggcgggccgcaaagcggccacg
ctgagcgcctccgacctcggttttgcgctggggccgcggctgaacgcggcgggccgtctg
gacgatatgtcgctgggcattcaatgcctgctcagcgacgatcccgaagaggccaggcag
attgcccagcaactcgatgatctgaacaacggccgtaaggaaatcgaaggccagatgaaa
cacgaggcgatgtcgctgctgaatgaaatgcgcgcactcgacgaaagccgtctgccggcc
ggcgtctgcctgttcgatcagaactggcatcagggcgtgatcggcattctggcgtcaagg
atcaaggaccgcctgcatcgcccggtgatcgcgttcgcgccggcgggcaaggaccagatc
aagggctcggcccgctcgattccgggcattcatattcgcgacgtgctcagcgacatcgcc
gccgcgcatccgaacctgctcagcaagttcggcggccacgcgatggcggccggcatgagc
atcgcgatgcacgattatccgcctttcgctttggcattcgacgaaatggtgcgaaagcgc
ctggacgccgtcgatctggagcaaaaagtgctttcggacggcgaactcggcgaaaaggaa
atgaccgtcgaattcgccgagctcctgcaaaatgccgcgacctgggggcagggctttccg
gaaccgatttttcacggcgagttcgaggtcgtgcaggccagcatcgtcggccagaaacat
ctgaaactggtgctcagaaatagcggcggtttcttgatcgacgcgatcgccttctttatc
gatcatcccgaaaaatggctcggtcttcgcgcctgccgggcggcgtataaactggacatc
aacgaattcaggggcaaccgcagtgtgcagttgatcgtgcagtatcttgaaaaaacggct
taa
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