Methylomicrobium lacus: ACEPPP_08900
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Entry
ACEPPP_08900 CDS
T10917
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mlau Methylomicrobium lacus
Pathway
mlau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACEPPP_08900 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlau03400
]
ACEPPP_08900 (recB)
Enzymes [BR:
mlau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACEPPP_08900 (recB)
DNA repair and recombination proteins [BR:
mlau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACEPPP_08900 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
Sirohm_synth_M
Motif
Other DBs
NCBI-ProteinID:
XGK41353
LinkDB
All DBs
Position
2022944..2026624
Genome browser
AA seq
1226 aa
AA seq
DB search
MTAAIALNAVDFPLAGTRLIEASAGTGKTYTIAALYVRLVLGHHLALERDLFPPDILVVT
FTEAATKELRDRIRGRLSQAARYFREQTDDSDPFLQAVRTHYDRAAWPACARRLELAANW
MDEAAVYTIHGWCNRMLQQHAFDSGSLFRQEVNTADLELLHEVVRDYWRSFFYPLTETAC
RVVAKLARSPEDLIKLLSPLLSETEAFGLEFEGDIKAVFQAWEDWENERQDLEAKARDQW
SLQRTEIGRLLNEASNNGWLNGTKYRKASFAEKLNEMADWASRRNPKTIDVLEKFGQESL
ESALVKAHQDKAAHLQHPAFAAIDALARHTREEIDTNGKITLHALHWIRNRYDGEKQRIA
RMTFDDMLTRLDQALQGGNGPRLASAIRQQYPIALIDEFQDTDPVQYRIFSALYPQDSDS
GSGCFMIGDPKQAIYSFRGADIYTYLKAHQHTLGRHYTLGTNFRSTMALVDAINQVFLQA
DRHPEGAFRFKREKDDPLPFLPVAAKGRDEEWLIQGQTAPALTFWHWDADEAVGMPAYRE
NMAEVAASEIVRLLNAAKSGQTGFKSAKGLEPLQPSDIAILVRSGTEARAMRNALAKRQL
RSVYLSERDSIFTTREAADLLIWLRALAEPRNERRVRAALSSATFGWTYQALQQLALDEP
LWEQQLERFAAYQQRWQQDGILPALRQLINDYDLYHRSTQDSEGERRITNLLHLAELLQH
AGHQLEGEQALIRHLAELIKAGGSHAGDEGIIRLESDANLIKIITIHKSKGLEYPLVFLP
FICSFREVNGRFSTFYRYHDDQQNLHIDLNKSDTIKALSDAERLQEDLRLLYVAITRARH
ACWLGIAPIKSGNGKECQLEKSAVGSILGWEAKMPAKDLKQQLTELKGDCASIAISALPD
ARSDLYFPPPQSDSPGSARTASAKIPNDWWIASYSALPTEDKLQAGEDQPNLPQEQEPET
ARDDKQSDEAEISLAQSATSPTGIHALPRGAGPGVLIHDLLEHCAHLGFSAVRADPALRK
ELIQKRFGASDWINHQDSIDSALSRWLSLPLLETTDICLGNLSPGAYRPELEFLIGADAV
KTQELDRLVTQHIFPGQPRPALLPKQVNGLLKGFIDLVFEHDQRYYVVDYKFNSLGGNDA
AYTQEALTAAMLAKRYDLQYALYLLALHRLLKARLGENYAYDTHIGGSLYLFLRGSQSPT
GGRLFDKPPRALIEGMDKLFYGGDTR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccatcgccttgaatgccgtcgacttccccttggccggcacgcgcttgatc
gaggccagcgcgggcaccggcaagacctatacgatcgcggcgctctatgtccggctggtc
ctcgggcatcatttagcgctggagcgcgatctgttcccgccggatattctggtggtcacc
tttaccgaggcggcgaccaaggaacttcgggaccgcattcgcggccgcctgagccaggcg
gcccgctattttcgcgagcaaacggacgacagcgaccctttcctgcaggccgtgcgcacg
cattatgacagggcggcctggcccgcctgcgcccggcgcctggaactggccgccaactgg
atggacgaggccgcggtgtatacgatccacggctggtgcaaccggatgctgcaacagcat
gcgttcgacagcggcagcctgtttcggcaggaggtcaataccgccgacctggagcttctg
catgaggtggttcgggattattggcgcagctttttctacccgctgacggaaaccgcctgc
cgtgtcgtcgccaaactcgcccgctcgcccgaggacctgatcaaactgctgtccccttta
ttgtccgaaaccgaagccttcgggcttgaattcgagggcgacatcaaggctgtttttcag
gcctgggaggactgggaaaatgaacgccaggacctggaagccaaagcccgcgaccaatgg
tcccttcaacgcaccgagatcggaaggctgctgaacgaggcatcgaacaacggctggctg
aacgggaccaaataccgcaaggcgagtttcgccgaaaaactgaacgagatggccgattgg
gcgagccgccgcaatcccaagaccatcgatgtgctggaaaaattcggccaggaaagcctg
gagtcggctctggtcaaagcccaccaggacaaggcggcgcatctgcaacatccggccttt
gccgccatcgatgccttggcccggcacacccgggaagaaatcgacaccaacggcaaaatc
accctgcatgccctgcactggatccgaaatcgctacgacggcgaaaagcagcgcatcgcc
cggatgaccttcgacgacatgctgacccgcctcgaccaggccttgcagggcggcaacggc
ccgaggctcgcaagcgcgattcgccagcaatatccgatcgcgctgatcgacgagtttcag
gacaccgaccccgtacaataccgcattttttcggcactgtatccacaagacagcgacagc
ggatcgggctgcttcatgatcggcgacccgaagcaggcgatttattcgtttcgcggcgcc
gacatttatacctatctgaaggcgcaccagcacacgcttggacggcattacacactgggc
accaatttccgctccaccatggctcttgtcgacgcgatcaaccaagtcttcctgcaagct
gaccggcaccccgaaggcgccttccgcttcaagcgtgaaaaagacgatccgctgcccttc
ttgccggtcgccgcgaaaggccgcgatgaagaatggctgatccaaggccagacggccccg
gccctgaccttctggcactgggacgcggacgaggcagtcggcatgcccgcctatcgcgag
aacatggccgaagtcgccgccagcgagatcgtcaggctgctgaatgcggccaagtccggg
cagaccggcttcaaatcggcaaagggactggagcccctgcaaccttcggacatcgcgatc
ctggtccgcagcggcaccgaggccagggcgatgcgcaatgccctggccaagcggcagttg
cgcagcgtctacctgtccgagcgcgattcgatcttcaccacccgcgaagccgcggatctt
ttgatctggctgagggcgctggccgaaccgcgcaacgagcgcagggtgcgcgccgcgctc
agctccgcgactttcggctggacctatcaggccttgcagcaactggccctggatgagccg
ctctgggaacagcaactggaacgctttgccgcctatcagcagcgctggcagcaggacggc
atcctgcccgccttgcgccaactgatcaatgactatgacctgtaccaccgctcgacacag
gacagcgaaggcgaacgccgcatcaccaacctgctgcacctggccgaactcctgcaacac
gccggccaccagctcgaaggcgagcaggcgttgatccggcatcttgccgaattgatcaaa
gccggaggcagccatgccggcgacgaaggcatcatccggctcgaaagcgacgcgaacctg
atcaaaatcatcacgatccataaatccaagggcctggagtacccgctggtttttctgcct
ttcatctgcagcttcagggaggtgaacggccgtttcagtaccttctatcgctatcatgac
gaccagcaaaacctgcatatcgatctgaacaagagcgacacgattaaagccctaagcgat
gccgaacgcctgcaggaagatttgcgcctgctttatgtcgcgatcacgcgggcgcgtcat
gcctgctggttgggcattgcgccgatcaagtccggcaacggcaaggaatgccagctcgaa
aagtccgcggtgggttcgatactgggctgggaagcaaaaatgccggctaaggacctgaaa
caacaactgaccgaactcaagggcgattgcgcttcgatcgcgatcagcgccttgcccgat
gcccgctcagacctctactttccgccgccgcagagcgacagccccggttcggcacgcacg
gccagcgccaaaatcccgaatgactggtggatagccagctacagcgcgctgcccaccgaa
gacaagcttcaggcgggagaagaccagcccaatctgccgcaggagcaggagccggaaacg
gcccgggacgacaagcagagcgacgaggcggaaatcagtctggcgcaatccgccacgtct
ccgaccggcatccatgccctgccccgtggcgcaggccccggcgtgctgattcatgacctg
ctcgaacactgtgcgcatctgggtttttcggccgtacgggcggatccggcgctcagaaag
gagctgatccaaaagcgtttcggcgccagcgactggatcaaccatcaggacagcatcgac
tcggccctgtcgcgctggctgtctctgcctctgcttgaaactacggacatctgcctgggc
aatctgagccctggggcttaccggcccgagctggaattcctgatcggcgcggacgcggtc
aagactcaggaactggaccgcctcgtgacccaacatatttttcccggccagccccgcccg
gccttgctgcccaagcaggtcaacggcctcttgaaaggcttcatcgatctggtcttcgag
catgaccagcgctattacgtcgtcgattacaagttcaacagcctcggcggcaacgacgcc
gcctacacccaagaagcgctgaccgcggcgatgctcgcgaaacgttacgacctgcaatat
gcgctgtatttgctggccctgcaccggctgctgaaggcccggctcggtgagaattacgct
tacgacacccacatcggcggcagcctgtatttgttcctgcgcggctcgcaaagcccgacc
ggcggcaggcttttcgacaagccgccgagggcgttgatcgaaggcatggacaagctcttt
tacggcggagatacacgatga
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