Methylomicrobium lacus: ACEPPP_09895
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Entry
ACEPPP_09895 CDS
T10917
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mlau Methylomicrobium lacus
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlau03016
]
ACEPPP_09895
Enzymes [BR:
mlau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACEPPP_09895
Transfer RNA biogenesis [BR:
mlau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACEPPP_09895
Prokaryotic type
tRNA splicing ligases
ACEPPP_09895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XGK37843
LinkDB
All DBs
Position
complement(2271349..2272779)
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AA seq
476 aa
AA seq
DB search
MDTGQLIQRDETCWEIPKKGAMRVPALIYADASLIRDMDQKVYEQITNVATLPGIVDAAY
AMPDAHWGYGFPIGGVAAFDPDQGGVISAGGVGFDISCGVRTLHTGLTIRDILEQKHRLA
DELSRAIPAGVGSRGKISLNHNEMIAMLNGGAQWAVDRGFGEAEDLERTEEQGCMKGADP
SEVSAKARERQHDEMGTLGSGNHYLEVQRVTEIYDQTIAARFGLAIDDIVITIHCGSRGL
GHQIGTEFLKDMAVSASQYKIALPDRELACAPINSPLGKRYLGAMRAGINCALANRQILT
HLTRQAVASIFPGARLDLFYDVSHNTCKVERHKVNGQMKELFIHRKGATRAYGPGHPELP
TAFKDVGQPVLIGGSMGTCSYVLCGAKDNERRAYSSSCHGAGRAMSRHQATKQWRGRELV
DDLARQGILIRSPSLRGIAEEAPLAYKDVSAVVDAADKAGLSRKVARLEPVICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggataccggtcaattgattcaacgcgatgaaacctgttgggaaatcccaaagaaaggc
gcgatgcgcgtgcctgcgctgatctatgcggatgcaagtctgatccgcgacatggaccag
aaggtttatgagcagatcacgaatgtcgcgaccttgcccggcatcgtcgatgcggcctat
gcgatgcccgatgcgcattggggctatggctttccgatcggtggtgtggccgctttcgat
ccggaccagggcggcgtgatctcggccggtggcgtcggtttcgatatttcctgcggcgtg
cgcaccttgcataccggcctgaccatcagagacattctggagcagaagcatcgcctcgcc
gatgaactttcccgcgcgattccggccggtgtcggcagccgaggcaaaatcagtttgaat
cataacgaaatgatcgcgatgctgaacggcggtgcgcaatgggcggtcgatcggggattc
ggcgaagcggaggatctggagcgcaccgaagagcaaggatgcatgaagggtgccgatccc
tcggaagtctccgcgaaagcccgcgagcgacagcacgatgaaatgggtactctgggttcc
ggcaatcattatctggaagtgcaacgggttaccgaaatatacgaccaaacgatcgcggca
cggttcgggcttgcgatagacgatatcgtgatcacgattcattgcggatctcggggcctg
ggccaccagatcggcaccgaatttctgaaagatatggcggtctcggccagccagtacaaa
atagccctgccagaccgggagcttgcctgtgcgccgatcaattcgccgctcggcaagcgc
tatctcggcgcgatgcgcgccggtatcaattgcgcgctggccaatcgccagatactgacc
catttgacccggcaggcggtggcctcgatatttccgggtgccaggctcgaccttttctat
gacgtgtcgcacaatacctgtaaggtggaaaggcataaggtcaacggccaaatgaaagag
ttgttcatccaccgcaaaggcgccacgcgtgcctatggccccggccaccccgaattaccc
accgccttcaaggatgttggtcagccggtcctgatcggcggctcgatgggcacctgttcg
tatgtcttatgcggagccaaagacaatgaacggcgcgcgtacagttcttcttgccatggt
gccgggcgcgcgatgagccggcatcaggcgaccaaacaatggcggggcagggaactggtc
gatgatctggccaggcaaggcatcctgatccgaagcccgtcgctacgcggcatcgccgaa
gaagcgcctctcgcctataaggatgtcagcgcggtggtggatgcggcggataaggcaggc
ctttcgcgcaaagtcgcaaggctggaaccggtcatttgcatcaaaggctag
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