Methylomicrobium lacus: ACEPPP_11090
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Entry
ACEPPP_11090 CDS
T10917
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mlau Methylomicrobium lacus
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlau03032
]
ACEPPP_11090 (topA)
03400 DNA repair and recombination proteins [BR:
mlau03400
]
ACEPPP_11090 (topA)
Enzymes [BR:
mlau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ACEPPP_11090 (topA)
DNA replication proteins [BR:
mlau03032
]
Prokaryotic type
DNA Topoisomerases
ACEPPP_11090 (topA)
DNA repair and recombination proteins [BR:
mlau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACEPPP_11090 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
XGK38071
LinkDB
All DBs
Position
complement(2516123..2518438)
Genome browser
AA seq
771 aa
AA seq
DB search
MSKNLVIVESPAKAKTIEKYLGKDFQVLASYGHVRDLIPKEGAVDPDNDFAMKYEVIERN
LRHVQAIGKALKDADALYLATDPDREGEAISWHLYELLNEKKALKNKTVHRVVFHEITKK
AVTEAIAHPAELATNLINAQQARRALDYLVGFKLSPLLWKKIRRGLSAGRVQSPALRMIV
ERELEIEAFKSREYWTIDAQLTADEQTFKAKLTHLAGEKLNQFSITDQETAEQARQTLLA
AADGRLIVTKLEKKQQKRNPAPPFTTSTLQQEAARKLGFTTKRTMMVAQQLYEGIDIGGE
TAGLITYMRTDSVNLSVEAVAEMREMIAENYGPENVPKDPRVFKTKSKNAQEAHEAIRPT
YPRYLPAQLKNHLSDEQFKLYDLIWKRTIACQMIQATINMIAVDLSCGEAGQHTFRATGS
TIASPGFMAVYLEGKDDTSDSDDKESFLPPLEEGRPVPLNDIVNAQHFTEPPPRFGEASL
VKALEEHGIGRPSTYASIISTLQNRDYATLENKRFHPTDVGRIVNKFLTEHFTKYVDYDF
TAKLEDDLDAVSRGEKDWIPLMSDFWKPFNTLIQEKDENVQRKDVTQEALDENCPECGSP
LSIRLGRNGRFIGCTNYPGCSYTRNLNEDQNEAVEPEVVEGRVCPKCESPLVLKSGRYGK
FIGCSAYPKCRHIEPLEKPLDTGVECPKCKKGSILKRKSRSNKIFYSCSEYPKCDYALWN
APLKESCPACNWPVLTVKETKRRGVEKVCPQKECSYATPYEGDPADIEGPK
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaatctcgtcatcgtagagtctcccgccaaggccaaaaccatcgaaaaatat
ctgggtaaggattttcaggtgctggcttcctatggccatgtccgcgatttgattcctaag
gaaggcgcggtcgatcccgacaatgatttcgcgatgaaatatgaggtgatcgagcgcaat
ttgcgccatgtgcaggcgatcggcaaggcgttgaaagacgccgatgcgctctatctcgcg
accgaccccgaccgcgagggcgaggcgatctcgtggcatctctatgagctgttgaacgaa
aaaaaagcactgaagaacaaaacggtgcaccgggtcgtctttcatgaaatcaccaagaag
gcggtgaccgaggcgatcgcgcatccggccgagctggcgacgaacctgatcaatgcgcag
caggcgcgccgggcgctcgattatttggtcggcttcaagctgtcgccgctgctgtggaaa
aagatccgtcgcggcctgtccgccggccgcgtgcagagccccgcgctgcgcatgatcgtc
gagcgcgagctcgaaatcgaggccttcaagagccgcgagtactggacgatcgacgcgcag
ttgaccgccgacgagcagactttcaaggccaagctgacccatctggccggcgaaaagctg
aatcaattcagcatcaccgaccaggagactgccgagcaagccagacaaactttattggcg
gcggcggacggccgcctgatcgtcaccaagctcgaaaagaaacagcagaaacgcaatccc
gcgccgccgttcacgacctcgacgctgcaacaggaagccgcgcgcaagctcggcttcacg
accaagcgcacgatgatggtcgcccagcaattgtacgaaggcatcgacatcggcggcgaa
accgccggcctgatcacctacatgcgtaccgactcggtcaatctgtcggtcgaggcggtc
gccgagatgcgcgagatgatcgcggaaaattacggcccggaaaacgtgccgaaagatccg
cgcgtattcaagaccaagtcgaaaaacgcgcaggaagcccatgaagcgattcggccgact
taccctcgctatctgcccgcccagctcaaaaatcatctcagcgacgagcagttcaagctt
tacgacctgatctggaagcgcacgatcgcctgtcagatgatccaggcgacgatcaacatg
atcgcggtcgacctgagctgcggcgaagcaggccagcacacattcagggcgaccggctcg
acgatcgcctctcccggcttcatggcggtgtatctggaaggcaaggacgacaccagcgac
agcgacgacaaggaaagcttcctgccgccgctcgaagagggccgtccggtgccgctgaac
gacatcgtgaacgcgcagcatttcaccgagcctccgccgcgttttggcgaagcaagcctg
gtcaaggcgctcgaagaacacggcatcggccggccttcgacctatgcctcgatcatctcg
accttgcagaaccgcgattacgcgacgctcgaaaacaagcgcttccatccgaccgatgtc
ggccgcatcgtgaacaagtttctgaccgagcatttcacgaaatatgtcgattacgacttt
accgcgaagctcgaagacgatctcgatgcggtgtcgcgcggcgagaaggactggattccg
ttgatgagcgacttctggaagccgttcaacacgctgatccaggaaaaagacgagaacgtg
cagcgcaaggacgtgacccaggaagcgctcgacgaaaactgccccgagtgcggcagtccc
ttgtcgattcgtctgggccgcaacggccgtttcatcggctgcaccaattatccgggctgt
tcctatacccgcaatctgaacgaagaccaaaacgaagcggtagagccggaggtggtcgag
ggccgggtctgcccgaaatgcgaatcgccgctggtcttgaagtcaggccgctacggtaag
ttcatcggctgtagcgcctatccgaaatgccgccatatcgagccgttggaaaaaccgctc
gataccggcgtcgaatgcccgaagtgcaaaaaaggcagcatcctgaaacgcaagtcgcgc
agcaacaagattttttattcctgttcggaatatccgaaatgcgactatgcgctgtggaat
gcgccgctgaaggaaagctgcccggcatgcaactggccggttttgaccgtcaaggaaacc
aagcggcgcggcgtcgaaaaagtctgtccgcagaaggagtgcagctatgcgacgccttac
gaaggcgatcctgccgacatcgaagggccgaaatag
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