Methylomicrobium lacus: ACEPPP_13485
Help
Entry
ACEPPP_13485 CDS
T10917
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mlau Methylomicrobium lacus
Pathway
mlau03020
RNA polymerase
Brite
Enzymes [BR:
mlau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACEPPP_13485 (rpoC)
Transcription machinery [BR:
mlau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACEPPP_13485 (rpoC)
DNA repair and recombination proteins [BR:
mlau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACEPPP_13485 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XGK38520
LinkDB
All DBs
Position
3057224..3061429
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLMNFLKRQGRAEDFDGIRIGLASPDMIRAWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIALLLDMTLREIERVLYFESFVVLDPGLTPLNKGQLLTDDEYLDAVEMHGDDFVAKM
GAEAIYDLLKAIDLKEEVNLLREEINSTNSETKIKKYSKRLKVIDSLLSSRNRPEWMILK
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLNRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLQFRGHATTIKAAKKMVEREGAEVWDILEEVIREHP
ILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSLEAQLEA
RTLMMATNNILSPANGEPVINPSQDVVLGLYYISRQKVNAKGEGGIFVSVGEVQKALMEK
TVELQSKIQLRITERTKAENGDIIENTHRVETTVGRALIWDIVPQLMPFELVNCDMTKKN
ISRLINYCYRYLGNKDTVVLADQLMYLGFRYATISGVSFGVEDMAIPAKKVDIIKSAEAE
VSEIQSQYSSGLVTDGERYNKVVDIWSHANDQVAKVMMDGLGEEAVENAEGKLVKQKSFN
SIFMMAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITSEDCGTENGLIMTPIIEGGDVVEPLSERVL
GRVAAKDVLDAAGENVVVPAGTLLNEHWVGVLEEQSIDQVLVRSIITCESRFGVCASCYG
RDLGRGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVQVKSSGTVRL
SNLKSVKNREGNLVAVSRSGEVGVVDDYGRERERYKIPYGAVLSVQEGSRVNTGDIIVTW
DPHTHPVITEVDGVVTLEHFNEGITVQKISDEVTGLSSLVVTDPKQRGSAGRELRPMVKL
IGANGEAIFLPGTEIPAQYFLPAGAIVGIKDGGEVKVGDVLARIPQESSKTRDITGGLPR
VADLFEARKTKDPAILAETSGTVSFGKETKGKQRVIITDAAGEQVETLIPKWRHITVFEG
EYVEKGETIAEGELTPHDILRLRGVEELANYLVKEIQDVYRLQGVKINDKHIEAIIRQML
RKVEITASGDTTMLKGDQVERAALREENDKMEAEGKIPASFEPVLLGITKASLATESFIS
AASFQETTRVLTDAAVRGLSDGLQGLKENVIVGRLIPAGTGLAYHENRKNRAAQYQVVES
EAATTVDAGDVEEALKQALNL
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttaatgaattttttgaagcgccaaggccgtgccgaagatttcgacggcatc
cgcattggcttggcatcgcccgacatgatccgtgcctggtcgtatggagaagtcaaaaaa
cctgaaacgatcaattaccgcacgttcaagccggagcgtgacggtctgttctgcgcgaag
attttcgggccggtcagcgactatgaatgcttgtgcggcaaatataaaagactcaaacac
cgcggcgtgatctgcgaaaagtgcggtgtcgaggtgaccttgtcgaaagtgcgccgcgaa
cggatgggccacatcgaactggccagcccggtcgcacacatctggttcttgaagtcgctg
ccgtcacggatcgccttgctgctcgacatgacattgcgcgagatcgagcgcgtgctgtat
ttcgaatcgttcgtggtgctcgaccccggcttgacgccgttgaacaaggggcaattgctg
accgacgacgagtatctcgatgcggtcgagatgcacggcgatgatttcgtcgcgaaaatg
ggcgccgaagcgatctacgacctgttgaaggcgatcgacctgaaagaagaggtcaatctg
ctgcgcgaagaaatcaactcgaccaattccgaaaccaagatcaaaaaatattcgaaacgc
ctgaaggtgatcgattccttgctgagctccagaaaccggccggaatggatgatcctcaag
gtattgccggtgctgccgccggagcttcgtcctctggtgccgctggacggcggccgcttc
gcgacctccgatttgaacgatctgtaccgccgcgtgatcaaccggaacaaccggttgaac
cgcctcctggatctgaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctcgacaacggccgccgcggccgcgcgatcaccggcaccaac
cggcgtccattgaaatcgctggccgacatgatcaagggcaagcagggccgtttccggcaa
aacctgctcggcaagcgcgtcgactattccggccgttctgtcatcgtggtcggccccacc
ctgcgcctgcatcagtgcggcctgccgaagaagatggcgctggaattgttcaagccgttc
atcttcagcaagttgcagttccgcggtcatgcgaccacgatcaaggcagccaagaagatg
gtcgagcgcgaaggcgcagaggtttgggatattcttgaggaagtgatccgcgagcatccg
attctgttgaaccgggcgccgactttgcaccgactgggcattcaggcgttcgagccgatt
ctgatcgaaggcaaggcgattcaattgcatcctctggtctgtagcgcgttcaacgcggac
ttcgacggcgaccagatggcggtgcatattccgctgtcgctcgaagcgcagctcgaagcc
agaacgctgatgatggcgaccaacaacatcctgtcgcccgctaacggcgagccggtgatc
aacccgtcgcaggacgtggttttgggcttgtattatatcagccggcaaaaggttaacgcg
aaaggcgagggcggcatcttcgtcagcgtcggtgaagttcaaaaggccttgatggaaaaa
acggtcgaattgcaatcgaagattcaattgcgtatcaccgaaagaaccaaggcggaaaac
ggcgacatcatcgaaaacacgcaccgtgtcgaaacgacggtcggccgcgcgctgatctgg
gacatcgtgcctcaattgatgccgttcgaattggtcaactgcgatatgaccaagaagaat
atctcgcgcctgatcaactactgctaccgttacttgggtaacaaggatacggtggttttg
gctgaccagttgatgtatctcggtttccgttatgcaacgatttccggcgtgtcgttcggc
gtcgaggacatggcgattccggcgaaaaaagtcgacatcatcaagtctgcggaagccgaa
gtcagcgagatccaaagccagtattcctccggtttggttaccgacggcgaacgttataac
aaggtcgtcgatatctggtcgcatgcgaacgatcaggtcgcgaaggtgatgatggacggt
cttggggaagaagcggtcgagaatgccgaaggtaagctggtcaagcaaaaatcgttcaac
tcgatcttcatgatggccgaatccggcgcgcggggttccgcggcgcagattcgtcagttg
gccgggatgcggggcttgatggcgaagccggacggctcgatcatcgagacgccgatcacc
gcaaacttccgtgaaggtctggacgtattgcaatacttcatctcgacccacggcgcacgt
aaaggtttggccgacaccgcgttgaagaccgcaaactccggatatttgactcgccgactg
gtcgatgtcgcacaggatctggtgattaccagtgaagactgcggtaccgaaaacggcctg
atcatgacgccgatcatcgaaggcggtgacgtcgtagaaccgttgtccgagcgcgtgctc
ggccgagtcgcggcgaaagatgtgctggatgcggccggcgaaaacgtggtcgtaccggct
ggcactttattgaacgaacactgggtcggcgtgctcgaagagcaaagtatcgaccaggtg
ttggtgcgttcgatcattacctgcgaaagccgtttcggcgtctgcgcgtcctgttatggt
cgcgacctgggccgcggccatcgggtcaatatcggtgaggcggtcggtgtgatcgcggcg
caatcgatcggcgagccgggtacccagttgacgatgcggaccttccacatcggcggcgcg
gcatcacggtcggcggcgatcagcaacgtacaggtcaaatcgtccggtacggtgcggctc
agcaacctgaaatcggtgaagaaccgcgagggcaatctggtcgcggtctcgcgttccggt
gaagtcggtgtggtcgatgattacggtcgtgaaagagagcgttacaagattccttacggt
gcggtgctgtcggtacaagaaggcagccgggtcaataccggcgatatcatcgtgacctgg
gatccgcatacgcacccggtcattaccgaggtggatggtgtggtcacgctggagcatttc
aacgaaggcatcaccgtgcaaaaaatctcggacgaagtgaccggcttgagctccttggtc
gtgaccgatccgaagcagcgcggcagcgcgggcagggaattgcgtccgatggtaaaactg
atcggcgcgaacggcgaggcgatcttcctgccgggcaccgaaattccggcgcaatacttc
ctgccggccggcgcgatcgtcggcatcaaggatggcggcgaagtgaaggtgggtgacgta
ctcgcgcggattccgcaggaatcctccaagacgcgtgacatcaccggcggtctgccgcgc
gtcgcggacttgttcgaggcgcgcaagaccaaggatccggctattctggccgaaaccagc
ggtaccgtgtctttcggcaaggagaccaagggcaagcagcgcgtgatcattaccgatgcg
gccggcgagcaggtggaaaccctgattccgaagtggcgtcatatcaccgtattcgaaggc
gaatatgtcgaaaagggtgaaacgatcgccgaaggcgaattgacgccgcatgacattttg
cgtctgcgcggcgtcgaagaactggcgaactatctggtcaaggaaattcaggacgtttac
cgtctgcaaggcgtaaagatcaacgacaagcatatcgaggcgatcattcgccaaatgctg
agaaaggtcgagattaccgcgtccggcgatactacgatgctgaaaggcgaccaggtcgag
cgcgctgccctgcgcgaggaaaacgacaaaatggaagccgaaggcaagattccggccagt
tttgagccggtcttgttgggtatcaccaaggcgtcgctggcgaccgagtctttcatttcg
gccgcttcgttccaggaaacgactcgcgtcttgaccgatgcggcggtgcgcggactcagc
gacggcttgcaaggcttgaaggaaaacgtaatcgtaggccgcctgattcctgccggaacg
ggtttggcttatcacgagaaccggaaaaaccgggcggctcagtatcaggtcgtcgagtcc
gaagcggcaacgacggtcgatgccggcgatgtcgaggaagcactgaaacaggcattaaat
ctgtaa
DBGET
integrated database retrieval system
