Methylomicrobium lacus: ACEPPP_13760
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Entry
ACEPPP_13760 CDS
T10917
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mlau Methylomicrobium lacus
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlau03016
]
ACEPPP_13760
Enzymes [BR:
mlau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACEPPP_13760
Transfer RNA biogenesis [BR:
mlau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACEPPP_13760
Prokaryotic type
tRNA splicing ligases
ACEPPP_13760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
XGK38573
LinkDB
All DBs
Position
complement(3102415..3103641)
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AA seq
408 aa
AA seq
DB search
MTTPYEVLHEPGRHPIKSWTRGVSFDDNSKRQLRNIAAMPFIHKWIAVMPDVHLGKGATI
GSVIPTIGAVIPAAVGVDLGCGMIAAKTSLSANQLPDSLEALRSRIETLVPHGLQRTVRG
GRDKGSWGEPPEDVLNAWAALSGRFDRLCEKHPFLKNTNNLTQLGTLGTGNHFIEICLDE
NDAVWIMLHSGSRGVGNRIGSHFIEQAKLDMERWFIHMPDRDLAYIPEGSAHFQDYIDAV
AWAQDFARINRETMMARAVRALRDVLAIPFETYIEAVNCHHNYIRREQHYGENVWVTRKG
AVSARLGEMGIIPGSMGAKSFIVKGLGNAESFCSCSHGAGRVMSRTEAKKRVSLAEHIEA
TAGVECRKDSEVIDETPSAYKPIDQVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccactccctacgaagtcctgcacgaacccggccggcatccgatcaaatcctggacg
cgcggcgtcagcttcgacgacaactccaaacggcaattgcggaatatcgcggcaatgccg
ttcatccacaaatggatcgcggtgatgccggacgtgcatttgggaaaaggcgcgacgatc
ggcagcgtgattccgacgataggcgcggtgattccggccgcggtcggcgtcgatttgggc
tgcgggatgatcgccgcgaaaaccagcctgagcgctaaccagttgcccgattctttggaa
gcgctacgcagccggatcgaaacgctagtgccgcacggcctgcaaagaaccgtgcgcgga
ggccgcgacaaggggagctggggcgaaccgcccgaagacgtgctgaacgcctgggcggca
ttgagcggccgcttcgaccgcctgtgcgaaaagcatccgttcctgaaaaacacgaacaat
ctgacgcagcttggaacgctcggcaccggcaaccacttcatcgagatttgcctggacgag
aacgatgcggtctggatcatgctgcactcgggttcgcgcggcgtcggcaacaggatcggc
tcgcatttcatcgaacaggccaaattggacatggaacgctggttcatccatatgccggac
cgcgatctggcctacatcccggaaggcagcgcgcactttcaggattacatcgatgcggtc
gcctgggcgcaggatttcgcccgaatcaaccgcgaaacgatgatggcgcgcgccgtgcgg
gcgctccgcgacgtgctcgcgatcccgttcgaaacctatatcgaagcggtcaactgccat
cacaactacatccgccgcgaacagcattacggcgagaatgtctgggtgacccgaaaaggc
gcggtcagcgcgcggctcggcgaaatggggatcattccgggcagcatgggcgcaaagtcg
ttcatcgtaaaggggctcggcaacgccgaaagcttttgcagctgcagccacggcgcgggc
cgggtgatgtcgcgcaccgaggcgaagaagcgcgtgtcgctggccgaacatatcgaggcg
acggccggcgtcgagtgccgcaaggacagtgaggtgatcgacgaaacgccgtccgcctac
aagccgatcgaccaggtgatggccgcgcaggccgatctggtcgaaatcgtgcataccctg
aagcaggtcgtctgcgtcaagggttaa
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