Methylomicrobium lacus: ACEPPP_14920
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Entry
ACEPPP_14920 CDS
T10917
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mlau Methylomicrobium lacus
Pathway
mlau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEPPP_14920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlau03019
]
ACEPPP_14920
Enzymes [BR:
mlau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACEPPP_14920
Messenger RNA biogenesis [BR:
mlau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACEPPP_14920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SNF2-rel_dom
HEM4
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XGK38792
LinkDB
All DBs
Position
3338986..3340263
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AA seq
425 aa
AA seq
DB search
MSFEQLGLAAPLLKAVAEQGYLTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLL
QLLAESDIKPQKPRKIRALILAPTRELAAQVYDSVRAYGKHLPLFAEVIVGGVSINGQIR
SLQRGCDIVVATPGRLLDHLLQRHIDLSHLQMLVLDEADRMLDMGFLPDIRRIIGHLPKQ
KQSLLFSATFPEEIKGLAKQLLHEPAEVSVAPHNTTADNIKELCYGIGKEYKRELLSYLI
GSNNWKQVLIFVRTKHGADRLEKQLIKDGIRTAALHGDKSQGARTRALEQFKAGQVAALV
ATDIAARGLDIDDLPHVINFDLPQVPEDYIHRIGRTGRAGANGEAISLVCPEEAYQLAQI
EKLLGRELPRVADTGYEPVSLKVENRSNPKAPKNPSGKKDYRHHKKTPNRGGKPAGKPPR
RAPAK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaacaactcggccttgccgcgccgcttctcaaagcggtcgcggaacagggc
tatctgaccccgaccccgatccaacagcaaacgatccccttgattctcgacggccgggac
gtactggccggcgcgcaaaccggcaccggcaagaccgccagcttcacgctgccgctgttg
cagcttttggccgaatccgatattaaaccgcaaaaaccgcgcaagatccgtgcgctgatt
ctggcaccgacccgcgaactggctgcgcaggtctatgacagcgtcagggcctacggcaag
catttgccgttattcgccgaagtgatcgtcggcggcgtcagcatcaacggccagatccgc
agcctgcaaaggggctgcgacatcgtcgtcgcgacgccggggcgcttgctcgatcatctg
ctgcaaagacacatcgacctgtcgcatctgcaaatgttggtgctcgacgaggccgaccgg
atgctcgacatgggtttcctgccggacatccgcaggatcatcggccacttgccgaaacag
aagcaaagcctgctgttttcggcgacctttccggaggagatcaaggggctcgcgaagcag
ttgctgcatgaaccggccgaggtgtcggtcgcgccgcacaatacgaccgcggacaatatc
aaggagctgtgctacggcatcggcaaggaatacaagcgcgagctcttgtcttatctgatc
ggcagcaacaactggaaacaggtgctgatcttcgtgcgcaccaagcacggcgcggaccgg
ctcgaaaagcagttgatcaaggacggcatccgcaccgccgcgctgcacggcgacaaatcg
cagggcgcgcggacaagggccctcgaacagttcaaggccggccaggtcgccgccctcgtc
gcgaccgacatcgccgcgcgcggtctcgacatcgacgacttgccgcatgtgatcaatttc
gatctgccgcaggtgccggaagactacattcaccggatcggccgcaccggccgcgcgggc
gcgaacggcgaggcgatttcgctggtttgtccggaggaagcctatcagcttgcccagatc
gaaaaactgctcggacgcgaactgcccagggttgccgacaccggttatgaaccggtatcg
ctgaaagtagagaatcgttcgaatccgaaggcgcccaagaatccgtccggcaaaaaagat
taccggcaccacaagaaaacgccgaatcgcggcggcaagccggcgggcaaaccgccgcgg
cgcgctccggccaagtag
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