Methylomicrobium lacus: ACEPPP_15575
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Entry
ACEPPP_15575 CDS
T10917
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mlau Methylomicrobium lacus
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mlau03009
]
ACEPPP_15575 (rlmD)
Enzymes [BR:
mlau01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACEPPP_15575 (rlmD)
Ribosome biogenesis [BR:
mlau03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACEPPP_15575 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
TRAM
MTS
Cons_hypoth95
DOT1
Methyltransf_15
Methyltransf_11
PrmA
Methyltransf_32
Methyltr_RsmB-F
N6_N4_Mtase
Methyltransf_23
Methyltransf_4
CMAS
FtsJ
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
XGK38917
LinkDB
All DBs
Position
complement(3470860..3472194)
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AA seq
444 aa
AA seq
DB search
MAGNRARKKTLPETPVRVTIESLAHDGRGVTHVDGKAVFIDEALPGEDVEFVYTEIRRDF
AEGRVVKLITRNEARSEAACPHYGVCGGCSFQHVEAAEQIHIKEDLLKEQFKRIGKVAVP
ELWQPLTGPHWGYRRKARMGVKYVAKKNRTLVGFRERRHPYLAEIDNCMVMHPVVGEKMI
DLSEMISGLSIREKVPQIEVAIGDEQCVLAVRVMEPPTEADKEKMRAFAREHGVSICLQP
KGPDSIVPLDGEPEVTPTYALPDQAIEFKFRPAMFTQVNYEINRQMINRVLDTLELNEND
TVLDLFCGLGNFTLPMARYAGRVIGVEGDQPLVNHAKDNARHNDIENVEFYAADLSKDVS
DQPWFNRKYNKILLDPSRAGASEVLKYFKKWQPEKIVYVSCNPSTLARDAGILVNELGYK
LVKAGVMDMFPQTGHVESMALFVK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaatagagcaagaaagaaaaccttaccggaaaccccggtccgggtcacgatc
gaatcgctcgcgcatgacgggcgcggcgttacgcatgtggacggcaaggccgtattcatc
gacgaggccctgcccggcgaggatgtcgaattcgtttataccgaaatccgccgcgatttt
gccgaaggcagggtcgtaaagctgatcacccgcaatgaggcgcgcagcgaggcggcctgc
ccgcattacggcgtctgcggcggctgcagctttcagcatgtcgaagcggccgagcagatt
catatcaaggaggacttgctgaaggaacagttcaaacgcatcggcaaggtcgcggtgccg
gaactctggcagcccttgaccggaccgcattggggctaccggcgcaaggcgcgcatgggc
gtcaaatatgtcgcaaagaaaaaccggaccctggtcggtttccgcgaacgccgccacccc
tatctggccgagatcgacaactgcatggtgatgcatcctgtcgtcggcgagaaaatgatc
gatctgtccgagatgatctcgggcctcagcatccgcgaaaaagtaccgcagatcgaggtc
gcgatcggcgacgagcaatgcgtgctcgcggtgcgcgtgatggaaccgccgaccgaggcc
gacaaggaaaagatgcgcgcgttcgcgcgcgagcatggcgtgtcgatctgcctgcaaccg
aaaggccccgattcgatcgtgccgctcgacggcgagccggaggtgacgccgacctatgcg
ctgcccgatcaggcgatcgaattcaaattccgcccggcgatgttcacccaggtcaactat
gagatcaaccggcaaatgatcaaccgggtgctcgacaccttggaactgaacgaaaacgac
acggtgctcgatctgttctgcggactcggcaactttaccttgccgatggcgcgttatgcc
ggccgggtcatcggcgtcgagggcgatcagccgctggtcaaccatgcgaaggacaatgcc
cgccacaacgacatcgagaatgtcgaattctacgcggccgacctcagcaaggacgtctcg
gaccagccctggttcaaccgcaaatacaacaagatcctgctcgacccgtcgcgggccggc
gcctccgaagtgctgaagtatttcaagaaatggcagccggaaaagatcgtctatgtatcc
tgcaacccgtcgaccctggcgcgcgatgcgggcatcctggtcaacgaactcggctacaag
ctggtcaaggccggagtgatggacatgttcccgcagaccgggcatgtcgaatcgatggcc
ctttttgttaaataa
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