KEGG   Methylomicrobium lacus: ACEPPP_16280
Entry
ACEPPP_16280      CDS       T10917                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
mlau  Methylomicrobium lacus
Pathway
mlau02024  Quorum sensing
mlau03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mlau00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACEPPP_16280 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ACEPPP_16280 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mlau03019]
    ACEPPP_16280 (hfq)
   03036 Chromosome and associated proteins [BR:mlau03036]
    ACEPPP_16280 (hfq)
Messenger RNA biogenesis [BR:mlau03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ACEPPP_16280 (hfq)
Chromosome and associated proteins [BR:mlau03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ACEPPP_16280 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: XGK39054
LinkDB
Position
3614930..3615169
AA seq 79 aa
MSKGQNLQDNFLNTLRKEHTPVSIFLVNGIKLQGRVDSFDQYVIMLKNTVSQMVYKHAIS
TIVPGKAVKMIPEAESEEE
NT seq 240 nt   +upstreamnt  +downstreamnt
atgtcaaaaggccaaaatctacaggataattttctgaatacgttacggaaagaacatacg
cctgtgtcgatattcctggtcaatgggatcaaattgcagggcagggtcgattcgttcgat
caatatgtgatcatgctgaaaaatacggtcagccaaatggtctataagcacgccatttcg
acgatcgtgcccggaaaagccgttaagatgattcctgaagccgaaagcgaagaagagtaa

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