Methylomicrobium lacus: ACEPPP_16280
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Entry
ACEPPP_16280 CDS
T10917
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
mlau Methylomicrobium lacus
Pathway
mlau02024
Quorum sensing
mlau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACEPPP_16280 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ACEPPP_16280 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlau03019
]
ACEPPP_16280 (hfq)
03036 Chromosome and associated proteins [BR:
mlau03036
]
ACEPPP_16280 (hfq)
Messenger RNA biogenesis [BR:
mlau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
ACEPPP_16280 (hfq)
Chromosome and associated proteins [BR:
mlau03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
ACEPPP_16280 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
XGK39054
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All DBs
Position
3614930..3615169
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AA seq
79 aa
AA seq
DB search
MSKGQNLQDNFLNTLRKEHTPVSIFLVNGIKLQGRVDSFDQYVIMLKNTVSQMVYKHAIS
TIVPGKAVKMIPEAESEEE
NT seq
240 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggccaaaatctacaggataattttctgaatacgttacggaaagaacatacg
cctgtgtcgatattcctggtcaatgggatcaaattgcagggcagggtcgattcgttcgat
caatatgtgatcatgctgaaaaatacggtcagccaaatggtctataagcacgccatttcg
acgatcgtgcccggaaaagccgttaagatgattcctgaagccgaaagcgaagaagagtaa
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