Mammaliicoccus lentus: H3V22_09960
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Entry
H3V22_09960 CDS
T07021
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlen
Mammaliicoccus lentus
Pathway
mlen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3V22_09960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlen03400
]
H3V22_09960 (mfd)
Enzymes [BR:
mlen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3V22_09960 (mfd)
DNA repair and recombination proteins [BR:
mlen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3V22_09960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
DUF3232
UB2H
ERG2_Sigma1R
Motif
Other DBs
NCBI-ProteinID:
QMU09925
LinkDB
All DBs
Position
1990414..1993923
Genome browser
AA seq
1169 aa
AA seq
DB search
MRHVIHEIIQKDERFQDLERIFGEKNILVTGLNQSSKALLILEQYLKHDKQLVIVTNNLY
QADKLEADILQLLPPEEVFKFPVQDIMIEAFSTQSPDLMSERVRTLTHLAQSKKGLFIVP
INGLKKQLTPPSIWKDHYKSIKIGDDIELEEWAKQLVDMGYKRQSLVSAIGEFSIRGGLI
DIYPVIGDPVRIELFDTEVDGMRVFDVETQRSLQNVEEVEITSASDYIFTSEQINRLSER
MEESYEQTREKLPKEIRPDLKDTYQNILMQDDELKDHQILRRVIAFMYDEVSTFVDYLAE
DALIVVDEYNRIKDTENSLDVEIEEFTQSLIESGQGFIGQRFIVESAFTGLLNKHKISYF
TLFTASMPVEIEEMVKFSCKPVQRFYGQYDIMQSEFDRYMKQGFTVVLLAESETRKTRIQ
SMLSDMKIPTVIDRIEHIDNSGQAVVTDGALSEGFELPYMKLVVVTEKELFKARERKQSK
RRQKLSNAEKIKSYQELNVGDYVVHVHHGVGKYLGVETLEVSGIHKDYIKIQYKGTDQLF
VPVDQMNDVQKFVGSDDKEPKVNKLGGTEWKKTKAKVQKNVEDIADELLKLYQEREQVEG
YQYGPDSEEQMTFEMDFPYEPTPDQITSLEEIKGDMEKLRPMDRLLCGDVGYGKTEVAIR
AAFKAVLEGKQVAVLVPTTILAQQHFETFRERMQEYPVEIQMMSRFRTPKQVKETKEGIK
KGFVDIVVGTHKLLSKDVEYKDLGLLIVDEEQRFGVKHKERIKALKTNVDVLTLTATPIP
RTLHMSLLGVRDLSVIETPPENRFPVQTYVLEQNMNFVKEALERELSRGGQAFYLYNRVQ
SIYQKSEQLSMLMPNARIGVAHGQMTERELEETMLNFVDGEYDILVTTTIIETGVDVPNA
NTLIIEDANRFGLSQLYQLRGRVGRSSRIGYAYFLHEQNKVLTEVAEQRLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGSQQSGFIDSVGYDLYSQMLEEAVNVKRGIEPESEGPQLEV
DVKVDAYIPAEYIKNEQAKIEMYKKMRSITTVSQLEDLQDELIDRFGEYPVEVERLLDVV
RIRLNGILFGITEIKETGNTIQLTTSEYTTNHLKGDVLFKVTEPLGRKLRIAVADNQMVF
KLQKTKQWLDDLKFLTEVINESLVDDDAI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagacatgtcattcatgaaattatacaaaaagatgagcgatttcaagatttagaacgt
atttttggagaaaaaaacatactcgttaccggtttgaatcaatctagtaaagcattgctt
attctagaacaatatttgaaacacgataaacaattagtcattgtgacaaataatttatac
caagcggataaattagaagcagacatactgcaattattaccgcctgaagaagtatttaaa
tttcctgtacaagatattatgattgaagcattttcaacacaaagcccagacttaatgagt
gagcgtgttagaactctaacccaccttgctcaaagtaagaaagggttatttatcgtgcca
ataaatggcttgaagaaacaactcacacctccgtccatttggaaagatcattataaatct
ataaaaataggtgatgatatagagttagaagaatgggctaagcaattagttgatatggga
tacaagagacagtccctagtttcagcgattggtgaattctcaattcgaggtggcttaatc
gatatataccctgttattggagaccctgtacgtattgagttgtttgatacagaagtagat
ggtatgagagtctttgatgttgaaacgcagcgttctttacaaaatgtagaagaagttgaa
ataacaagtgcaagtgattatattttcacttcagaacaaatcaatagattatcagaacgt
atggaagaatcatatgagcaaacgcgtgaaaaactaccgaaagaaattcgtcctgatttg
aaagacacttatcaaaatattttaatgcaagatgatgaattaaaagatcatcagatttta
agacgagttattgcatttatgtatgatgaggtatctacatttgtagattatttagcagaa
gacgctcttattgtagtagatgaatataatagaattaaagacactgaaaactcattagat
gtagaaattgaagaattcacgcaatctttaattgaatctgggcaagggtttataggacaa
cgctttattgtagaatcagcgtttactggtttgttgaataaacataaaatttcttatttt
actttatttacagcaagcatgcctgtagagatagaggaaatggtcaagttttcatgtaaa
ccagtgcaacgtttttatggacaatatgatattatgcagtctgaatttgatcgctatatg
aaacaaggattcactgttgttttattggcagaatcagaaacacgcaaaacgagaattcaa
agtatgctcagcgacatgaagataccaactgtaatagatcgtatagaacatatcgataat
agtggtcaagcagttgttacagatggggcattatctgaaggatttgaattgccgtacatg
aaattagttgttgtgactgaaaaagaactcttcaaagcacgcgaacgtaaacaatctaaa
agaagacaaaaactgtcgaatgcagagaaaattaagtcttatcaagagttaaatgttgga
gattacgttgttcatgtacatcacggtgtaggtaaatatttaggtgttgaaacattagaa
gtttcaggcatacacaaagactatattaaaattcagtacaaaggaacagaccaattattt
gtacctgttgatcaaatgaacgatgttcaaaagtttgttggctcagatgataaagagcct
aaagttaataaattaggcggaacagaatggaaaaaaacaaaggctaaagttcaaaaaaat
gttgaagatattgctgatgaattattaaaactttatcaagaacgtgagcaagtggaaggc
tatcaatatggacctgattctgaagaacaaatgacatttgaaatggactttccttatgaa
ccaacaccagatcaaattacttcattagaagaaatcaaaggtgatatggaaaaacttaga
cctatggaccgcttactttgtggagatgttggttacggtaaaactgaagttgcgattaga
gcagctttcaaagctgtgttagaaggtaaacaagtagcagtcttagtacctacaactatc
ttggctcaacaacactttgaaacttttagagagagaatgcaagaatatcctgtcgaaatt
caaatgatgagtcgttttagaacgcctaaacaagtaaaagaaacaaaagaaggtattaaa
aaaggttttgtagacatcgtagttggtactcataaattactaagtaaagatgtagaatat
aaagatttaggtttattaattgtcgatgaggaacaacgatttggtgttaaacataaagaa
agaattaaggcattaaaaactaatgttgatgtattaacactaacagctacaccaatacca
agaacccttcatatgagcttgttaggtgtaagagatttatctgttatagagacgccacct
gagaatagattcccagtacaaacttatgtattagaacagaatatgaattttgtaaaagag
gcattagaaagagagttgtctcgaggtggacaggcattctatttatataatagggttcaa
tcgatttaccaaaagagtgagcagttatcgatgcttatgcctaatgcaagaataggtgta
gctcatggtcaaatgacggaacgtgagttagaagagactatgcttaattttgttgacggt
gaatatgatattttagtaactacgacaattatagagacgggcgtagatgttcctaacgct
aacactttgattattgaagatgcgaatcgatttgggttaagccaactttatcaattaaga
gggcgcgttggacgttctagtagaataggttatgcttacttcttacacgaacaaaataaa
gtactgacagaagttgctgaacaaaggttacaagcaattaaagaatttacagaattaggt
agcgggtttaaaattgcaatgagagacttgaatataagaggtgcaggtaacctgttagga
agtcagcaatcaggatttatagattctgttggttatgacttatattctcaaatgttagaa
gaagcggtcaatgttaaacgtggtatagagcctgaatcagaaggaccacaattagaagtt
gatgttaaagttgacgcttatatacctgcagaatatatcaaaaatgaacaagcaaaaatt
gaaatgtataaaaagatgagaagtattactactgtttcccagttagaagacttgcaagat
gaactaattgatcgctttggtgaatatcctgtagaagtagaacgattactagatgttgta
agaattagattaaatggtattttatttggaattaccgagattaaagaaacaggaaataca
attcaattaacaacctcagaatatacaacaaaccacttgaaaggtgacgtattatttaaa
gttacagaaccactaggtagaaagcttagaatagctgttgcggataatcaaatggtgttt
aagttacaaaaaacaaaacagtggcttgatgatttgaagttcttaacagaagttattaat
gagagtttggtggatgatgacgcaatctaa
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