Mammaliicoccus lentus: H3V22_13860
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Entry
H3V22_13860 CDS
T07021
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mlen
Mammaliicoccus lentus
Pathway
mlen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3V22_13860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlen03019
]
H3V22_13860
Messenger RNA biogenesis [BR:
mlen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3V22_13860
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QMU10632
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Position
complement(2781636..2783309)
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AA seq
557 aa
AA seq
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MKPIQKNEVGVYALGGLGEIGKNTYALEYQDEIIVIDAGIKFPDDDLLGIDYVIPDYTYL
IQNKHKVKALFITHGHEDHIGGVPYLLKQFNVPIYSGPLALGLIRNKLEEHHLLKTAQLN
EITEDSVFEFKHFKISFYLTTHSIPEAYGIIADTPQGKIVHTGDFKFDFTPVGQPANIAK
MAQLGEEGVLCLLSDSTNSEVPNFTLSEKEVGQNVDEIFRKCTGRIIFATFASNIYRVQQ
AVEAAVKYNRKIVVFGRSMENNIKIGTDLGYIKVPPETFIEPNKINTVPKHEILILCTGS
QGEPMAALSRIANGTHRQISIIPDDTVVFSSSPIPGNTKSVNRTINALYKAGADVIHGKL
SNIHTSGHGSQDEQKLMLRLIKPKYFMPIHGEYRMLKKHSETGVNCGVDPDNIFVYEIGD
VLALTKDSARYAGRIPSGSVFVDGSGIGDIGNVVIKDRKVLSEEGLVIVVVSIDFKTKQL
LSGPDIISRGFVYMRESGHLIYDAQRLIKKSVIEKLNNNDKVEWHHVKATITEALQPYLY
EKTARKPMILPIIMKIK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccatccaaaaaaatgaagtaggtgtatatgcactgggaggactcggtgaaata
ggtaaaaacacgtacgccctcgaatatcaagatgaaataatcgtaatagatgctggtatt
aagttcccagatgacgatttgcttggtatcgattacgtgatacctgattatacttactta
atacaaaacaaacataaagtaaaagctttattcattacacatggacacgaagaccatatt
ggtggcgtcccttatctacttaaacaatttaatgttcccatatacagtggaccattagct
ttaggtttaattagaaataaattagaagaacatcatttactaaaaactgcacaactcaat
gaaataactgaagactctgtgtttgaatttaaacactttaaaatctcattttatttaaca
acacatagtatacctgaagcatacggtattatagctgatacacctcaaggtaaaattgtt
catactggtgacttcaaatttgatttcacacctgttggacaaccagcaaatattgctaaa
atggctcaattaggtgaagaaggcgtactttgtttactttcagattctactaactctgaa
gttcctaactttacactaagtgaaaaagaagttggacaaaatgtagatgagattttccgt
aaatgtacaggaagaattatttttgcgactttcgcatcaaatatatatcgtgtacaacaa
gctgttgaagctgccgttaaatacaatcgtaaaattgtagtattcggtcgttcaatggag
aacaacattaaaattggtactgatttaggatatattaaagtaccacctgaaacatttatt
gaacctaataaaatcaatactgtgcctaagcatgaaatattaattttatgtacaggttct
caaggtgaaccaatggctgctttatctagaatagctaatggcacacatagacaaatcagt
attatacctgatgatacagtagtatttagttcttcccctattccaggtaatacaaagagt
gttaacagaacaataaacgcgctttataaagctggagcagatgttatccatggtaagttg
tcgaatattcatacatctggacacggttctcaagatgaacaaaaattaatgcttcgttta
attaagccaaaatatttcatgccgattcatggtgaatatagaatgcttaagaaacacagt
gaaacaggtgttaactgtggcgttgatcctgataatatatttgtatatgaaatcggtgat
gtattagcacttacgaaagattctgcacgatacgcaggacgcataccttctggaagtgtg
ttcgtagatggaagcggaattggagatataggcaacgttgttataaaagaccgtaaagta
ttatcagaagaaggtttagtaattgtagttgtaagcattgactttaagacaaagcaattg
ctttctggtcctgatattatatctcgtggttttgtatacatgagagaatctggtcattta
atttatgatgcacaacgattaattaaaaagtcagtaattgagaaattaaataataatgat
aaagttgaatggcatcatgttaaagcaacaataacagaagcgttacaaccgtatttatac
gaaaaaactgctcgtaaaccaatgattttaccaatcattatgaaaatcaaataa
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