KEGG   Myotis lucifugus (little brown bat): 102438883
Entry
102438883         CDS       T07795                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
mlf  Myotis lucifugus (little brown bat)
Pathway
mlf03013  Nucleocytoplasmic transport
mlf03015  mRNA surveillance pathway
mlf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mlf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102438883 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102438883 (DDX39B)
   03015 mRNA surveillance pathway
    102438883 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mlf03019]
    102438883 (DDX39B)
   03041 Spliceosome [BR:mlf03041]
    102438883 (DDX39B)
Enzymes [BR:mlf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102438883 (DDX39B)
Messenger RNA biogenesis [BR:mlf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102438883 (DDX39B)
Spliceosome [BR:mlf03041]
 Complex C
  Other components
   EJC/TREX
    102438883 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102438883 (DDX39B)
SSDB
Motif
Pfam: Helicase_C DEAD CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 102438883
NCBI-ProteinID: XP_014302402
Ensembl: ENSMLUG00000001681
LinkDB
Position
Unknown
AA seq 310 aa
MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA
LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV
CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ
RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI
AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI
DISSYIEQTR
NT seq 933 nt   +upstreamnt  +downstreamnt
atgtgtcacacccgggagctggcttttcagatcagcaaggagtatgagcgcttctccaag
tacatgcccaatgtcaaggtggcagtgttttttggaggtctgtccatcaagaaggatgaa
gaggtgctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagcc
ttagctcgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgt
gataagatgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgacc
ccccacgagaagcaggtcatgatgttcagtgccaccttgagcaaagagatccgtcccgtc
tgccgcaagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacg
ctgcacgggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctc
tttgaccttttggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcag
cgctgcatcgccctggcccagctcctggtggagcagaacttcccagccatcgccatccac
cgagggatgccccaggaggagaggctttctcggtatcagcaatttaaagattttcaacga
cgaattcttgtggctaccaacctgtttggccgaggcatggacatcgagagggtgaacatt
gcctttaattacgacatgcctgaggactccgacacctacctgcatcgggtggccagagca
ggccggtttggtaccaagggtttggccatcacgtttgtgtcagatgagaatgatgccaag
atcctcaatgatgtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagata
gacatctcctcctacattgaacagacacgatag

DBGET integrated database retrieval system