Myotis lucifugus (little brown bat): 102438883
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Entry
102438883 CDS
T07795
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mlf
Myotis lucifugus (little brown bat)
Pathway
mlf03013
Nucleocytoplasmic transport
mlf03015
mRNA surveillance pathway
mlf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102438883 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
102438883 (DDX39B)
03015 mRNA surveillance pathway
102438883 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlf03019
]
102438883 (DDX39B)
03041 Spliceosome [BR:
mlf03041
]
102438883 (DDX39B)
Enzymes [BR:
mlf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102438883 (DDX39B)
Messenger RNA biogenesis [BR:
mlf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102438883 (DDX39B)
Spliceosome [BR:
mlf03041
]
Complex C
Other components
EJC/TREX
102438883 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102438883 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102438883
NCBI-ProteinID:
XP_014302402
Ensembl:
ENSMLUG00000001681
LinkDB
All DBs
Position
Unknown
AA seq
310 aa
AA seq
DB search
MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA
LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV
CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ
RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI
AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI
DISSYIEQTR
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcacacccgggagctggcttttcagatcagcaaggagtatgagcgcttctccaag
tacatgcccaatgtcaaggtggcagtgttttttggaggtctgtccatcaagaaggatgaa
gaggtgctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagcc
ttagctcgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgt
gataagatgcttgaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgacc
ccccacgagaagcaggtcatgatgttcagtgccaccttgagcaaagagatccgtcccgtc
tgccgcaagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacg
ctgcacgggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctc
tttgaccttttggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcag
cgctgcatcgccctggcccagctcctggtggagcagaacttcccagccatcgccatccac
cgagggatgccccaggaggagaggctttctcggtatcagcaatttaaagattttcaacga
cgaattcttgtggctaccaacctgtttggccgaggcatggacatcgagagggtgaacatt
gcctttaattacgacatgcctgaggactccgacacctacctgcatcgggtggccagagca
ggccggtttggtaccaagggtttggccatcacgtttgtgtcagatgagaatgatgccaag
atcctcaatgatgtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagata
gacatctcctcctacattgaacagacacgatag
DBGET
integrated database retrieval system