Methylovirgula ligni: CWB41_08705
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Entry
CWB41_08705 CDS
T05824
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWB41_08705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlg03019
]
CWB41_08705
Enzymes [BR:
mlg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWB41_08705
Messenger RNA biogenesis [BR:
mlg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWB41_08705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QAY95804
LinkDB
All DBs
Position
complement(1805880..1807259)
Genome browser
AA seq
459 aa
AA seq
DB search
MRSYERHLVTKFSDLGLAEMLLRALDREGYETPTSIQDQAIPLLMQGRDLLGIAQTGTGK
TAAFALPILNRLIADRQRPAPFTARVLVLAPTRELAAQIADSFRTYGQFLRPSVGVIVGG
VSHRPQNDMLARGLDVLVATPGRLLDHLGSGRFKLAATEVLVLDEADHMLDLGFIVPIRQ
IVAKLPKQRQTLLFSATMPKEIAGLAQDMLNNPAEVSVAPTATTAERVEQHVFLVDGAAK
RDMLVELMSGADVSRAIVFTRTKRGADRVAQHLDAAGVGVEAIHGNKSQSQRIRALDGFR
RGRTRVLVATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAFSLCDNG
ERGLLRQIEKATRQTLAFTDRRSADARNADAEPARHNPRAPRAGAAKDDGGRGAQQRPHR
EGQQLDGHRPGGKRPARAAQGRKRRPFNGESRPQFSRPG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcctatgaaagacacctcgtgacaaaattttccgatctcggtctcgccgagatg
ctgcttcgcgctctcgaccgtgaaggctacgaaactccgacttccatccaggaccaggcc
atcccgcttctgatgcagggccgcgaccttctcggcatcgctcagaccggcaccggcaag
accgccgctttcgccctgccgatcctcaaccggctgatcgccgatcgccagcggccggcg
ccctttacggcccgtgtgctcgtgcttgcgccgacgcgcgaactcgctgcgcagatcgcc
gatagcttccgcacctatggccagtttctgcgcccgagcgtcggcgtcatcgtcggcggc
gtctcgcaccgtccccagaatgacatgctggcgcgcggcctcgacgtgctggtcgcgacg
cccggccgcctgctcgatcatctcggctccggccgcttcaagcttgccgcgaccgaggtt
ctcgtgctcgacgaagccgaccatatgctggatctcggcttcatcgtcccgattcgccag
atcgtcgccaagctgccgaagcagcgtcagacgctgctgttctccgcgaccatgccgaag
gaaatcgccggtctcgcgcaggatatgctcaacaatccggccgaggtgtcggttgcaccg
accgccacgacggccgagcgcgtcgagcagcatgtgttcctggtcgatggcgctgccaag
cgcgatatgctggtcgaactgatgagcggcgccgacgtatcgcgcgccatcgtcttcacc
cgcaccaagcgcggcgccgatcgcgtggcgcagcatctcgatgccgccggtgtcggcgtc
gaagcgatccacggcaacaaaagccagagccagcgtattcgcgcgctcgacggcttccgc
cgcggccgcacgcgcgtcctcgttgccaccgacatcgccgcgcgcggcatcgacgtcgac
ggcgtgacacatgtcgtgaattacgaattgccggagacgcccgaagcttacgtccatcgc
attggccgcaccgcgcgcgccggtgcctcgggccgcgcgttctcgctgtgcgataacggc
gagcgtggcttgctgcgccagatcgagaaggcaacccgccagacattggccttcaccgac
cgccgcagcgccgacgcccgcaatgcggacgccgagccggcacgtcacaatccaagagcc
cctagggccggcgccgccaaggatgacggcggccgcggtgctcagcagcgtccgcatcgc
gaaggccagcagcttgacggccatcgccccggcggcaaacgccccgcacgcgccgctcaa
gggcgcaagcgccggccttttaacggcgaaagccgtccgcaattctcccggccgggatga
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