Methylovirgula ligni: CWB41_10505
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Entry
CWB41_10505 CDS
T05824
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mlg
Methylovirgula ligni
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlg03016
]
CWB41_10505 (rnd)
Enzymes [BR:
mlg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CWB41_10505 (rnd)
Transfer RNA biogenesis [BR:
mlg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CWB41_10505 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QAY96106
LinkDB
All DBs
Position
complement(2173340..2174518)
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AA seq
392 aa
AA seq
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MSLITTNRDLADASRRLASHPFITVDTEFLRETTFWPQLCVVQLASPEEAIAVDALAEGI
DLSPVFALMADPKIVKVFHAARQDIEIIWNLARLIPAPLFDTQVAAMVCGYGDQIAYGEL
VQAVCKVALDKSSRFTDWSRRPLSEAQVTYAIADVTYLRDIYLALHKRLESTGRLSWLDD
EMAQLTSPDVYEQHPERAWERFRGRARRPRDLAVLMELAAWREAEAQSRDVPRGRVLKDD
ILIEVAAAAPRTADELSNLRAFPRGMERSRAGTDILAAIQRGLARDPKTLPKIERERRNG
NGATVELLKVLLRQVSEAHDVAAKMIATVEDLETLAATPRAKIPALTGWRYEIFGAKALE
LIDGRLALTLEKGKVVTLEWQDTPESAAAAAR
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgattacgacgaatcgcgacctggcggacgcctcccgccgcctggcatcccac
cctttcatcacagtcgacacggaattcctgcgggaaacgacgttctggccccagctctgc
gtcgtgcagctggcctcgcccgaagaagcgatcgccgtcgacgcccttgccgaaggcatt
gatctttctccggtttttgccttgatggcagacccgaagatcgtcaaggtctttcatgcc
gcccggcaagacattgagatcatttggaatctcgcccgcctgatcccggcgccgctgttc
gacacgcaggtcgccgcgatggtctgcggctacggcgaccagatcgcctatggcgaactc
gtccaggcggtctgcaaggtggcgctcgacaaatcctcgcgctttaccgactggtcgcgg
cgccccttgtcggaggcgcaggtcacttacgccatcgctgacgtgacctatctgcgcgat
atctacctggcgctgcacaagcggctcgaatcgaccggacggctgtcctggctcgacgac
gaaatggcacagctcacgtctcccgacgtctatgagcagcatccggagcgggcctgggag
cggtttcgcggccgggcgcggcgcccgcgcgacctcgccgtgctgatggagcttgccgcc
tggcgcgaggcggaagcccagagccgtgacgtgccgcgcggccgcgtgctgaaggacgat
atattgatcgaggtcgccgctgcggcgccgcggacggcggacgagctcagcaatctgcgc
gccttcccgcgcggtatggagcgctcgcgtgccggcaccgatattctcgccgctatccag
cgcggcctcgcccgcgacccgaaaaccttgccgaagatcgaacgcgagcggcgcaacggc
aatggcgcgacggtcgagctcttgaaagtcctgctgcgtcaggtcagcgaggcgcatgac
gtcgccgcgaaaatgatcgccacagtcgaagaccttgaaactctggccgccacgccgcgc
gctaaaattccggcgctgacaggctggcgctacgagattttcggcgcaaaggcgctcgaa
ctgatcgacggccgcctggcgctgacgctcgaaaaaggcaaggtcgtcacgctcgaatgg
caggacacgccggagagcgcggccgcggcggcgcggtaa
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