Methylovirgula ligni: CWB41_11240
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Entry
CWB41_11240 CDS
T05824
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03410
Base excision repair
mlg03430
Mismatch repair
mlg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CWB41_11240 (recJ)
03430 Mismatch repair
CWB41_11240 (recJ)
03440 Homologous recombination
CWB41_11240 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlg03400
]
CWB41_11240 (recJ)
DNA repair and recombination proteins [BR:
mlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CWB41_11240 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CWB41_11240 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWB41_11240 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2017
Motif
Other DBs
NCBI-ProteinID:
QAY96233
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All DBs
Position
2317656..2319512
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AA seq
618 aa
AA seq
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MIRRGVNQPLLSTQNLTPAPGRPLLGVMRSALDRPWRERLDAGGMARALAMTQVHGHPEL
LARVLAGRGVPMDEAALYLDPTLRRLLPDPSRLADMDAAAARLAAAVRAGEKIAIFGDYD
VDGAASAALLGDFLKAAGTPYQIHIPDRIFEGYGPNVQAIAMLADAGAKLLVCVDCGTTS
HAPLEEARRRGLDVIVLDHHQAPEQLPPAIVVNPNRQDDLSGLGQLCAAGVVFLTLIAVN
RLLRAQNFWDDARPEPDLLLGLDLVALATVADVAPLTGLNRALVVKGLALMRARGRPGLA
ALFDVAGAGGPPTAQHLGFLIGPRINAGGRIGDAALGAKLLGHRDPLAARQIAEELNRLN
RERQTVEIATLEIATAEALAAADRAGEGAAVLVAGEGWHSGVVGLVAARLKEKFRRPAFA
ITFEGDIGTGSGRSIAGVDIGKVVRQAVEAGLLVKGGGHAMAAGVTLRRERLAEFAAFLE
SAIAENVAAARAAEALLVDAMLTAAGANLALHAILEKAGPFGSGNPEPVFVFPAHRLVDV
MPVGQGHLRWRAQSADGASLEGILFRAAEEPLGRALVSARGQAVHLAGSLVLDRWNGRER
IQLRLLDLALAETGTGTA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgataagaaggggcgtgaaccagcccctgctttcgacccaaaatctcacgcctgcaccg
ggacggcctttgcttggggtcatgcgctcggctcttgaccgtccgtggcgcgagcggctc
gatgccggcgggatggcgcgggcgctggcgatgacgcaggtccacggccatccggagctg
ttggcgcgagttctcgccgggcgcggcgtcccgatggacgaggcggcgctctatctcgat
ccgacgctgcgccgcctgctgccagacccttcgcgcctcgccgatatggacgctgcagcc
gcgcgtctcgccgccgctgtccgggccggggagaagatcgccattttcggcgattacgat
gtcgatggcgcggcctcggcggcactgctcggcgatttcctcaaggccgccgggacgccg
tatcagatccatattcctgaccggattttcgagggctacgggcccaacgtccaggccatc
gccatgctggcggacgctggcgccaagctgctcgtctgcgtcgattgcggcacgacaagc
catgcgccgctcgaagaggcgcgccggcgcggcctcgatgtgatcgtgctcgatcatcat
caggcgccggagcagcttccgcccgccatcgtcgtcaatcccaaccggcaggacgatctt
tccggcctcggccaattgtgcgcggcgggcgtcgtgttcctcacgctcatcgcggtcaac
cgccttctgcgcgcgcaaaacttctgggacgatgcgcggcccgagccggatcttttgctg
gggctcgatctcgtcgcgctcgccaccgtcgccgatgtcgcgccgctgaccgggctcaac
cgcgctctggtcgtcaagggcctcgcgctgatgcgcgcacgtggccgccccggcctcgcc
gcgctcttcgatgtcgccggggcgggcggcccgccgaccgcgcagcatctcggcttcctg
atcggcccgcgcatcaatgccggggggcgaatcggcgatgcggcgctcggcgccaaactg
ctgggccatcgcgatccgctggcggcgcggcagatcgcggaggaattgaaccggctcaat
cgcgagcgccagacggtggagatcgcgacgctcgaaatcgccacggcagaggctttggcg
gcggccgatcgcgccggcgagggtgcagccgttctcgttgccggcgagggctggcattcg
ggcgtcgtcggtctcgttgccgcgcgcctgaaggagaagtttcgccgcccggccttcgcc
attacgttcgagggcgatatcggcaccggctcggggcgatccattgccggtgtcgatatc
ggcaaggtcgtgcgtcaggcggtggaggccggactgctcgtcaaaggcggcggtcacgca
atggcggccggcgtgacgcttcgccgcgaacggctcgccgaattcgcggcgtttctcgaa
tcggcgatcgcggaaaacgtcgccgcagcgcgggccgccgaggccctgctggtcgatgcg
atgctcaccgccgccggggccaatcttgcgctccatgcgatattggaaaaggcggggcct
ttcggctccggcaatccggagcccgttttcgtctttcccgcgcaccggcttgttgacgtg
atgccggtcgggcaggggcatttgcgctggcgcgcccaatcggccgatggcgcgagcctg
gagggcattctcttccgggccgcagaggagccgctgggccgggccttggtatcggcgcgg
gggcaggcggtgcatctcgcgggcagcctcgtcctcgaccgctggaacgggcgcgagcgt
atccaactgcggcttctcgacctcgcgctggctgaaacggggactgggacggcataa
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