Methylovirgula ligni: CWB41_15770
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Entry
CWB41_15770 CDS
T05824
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWB41_15770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlg03021
]
CWB41_15770 (rpoB)
03400 DNA repair and recombination proteins [BR:
mlg03400
]
CWB41_15770 (rpoB)
Enzymes [BR:
mlg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWB41_15770 (rpoB)
Transcription machinery [BR:
mlg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWB41_15770 (rpoB)
DNA repair and recombination proteins [BR:
mlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWB41_15770 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QAY97012
LinkDB
All DBs
Position
complement(3229803..3233939)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQAITQTFSGRKRVRKFFGQLREVAEMPNLIEVQKASYDQFLLVDEPAGGRPDEGLEAV
FRSVFPISDFASVSLLEFVKYVFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPETG
AKSVKDIKEQDVYMGDMPFMTSNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKL
LFAARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLYALGMDGEEILSTFYNTITY
TRDGEGWRVPFDPERMKGVKVSEDLIDSDTGEVAVEAGKKLTIRSARQLAEKGLKAIRAQ
DADLNGQYIATDLYDPNTGEIFAEAGDEITPKTLPALIEAGFAELPILDIDHVNIGPYIR
NTLAVDKNSSREEALFDIYRVMRPGEPPTIDTAEAMFHSLFFDAERYDLSAVGRVKMNMR
LDLDAPDTMRVLRKADILAVVKALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRLGL
LRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKR
RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIE
APYRRVKDGQVTDEVIYLSAMEESKHYVAQANAPIDGQHRLTEDLVVCRHAGDVIMVPTE
RVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPFVGTGMEAVV
ARDSGAAIAARRAGVVDQIDATRIVVRATEEPDPSKPGVDIYRLLKFQRSNQSTCINQKP
LVRVGDYVRKGDILADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLNEKIVKDDVFT
SIHIDEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQAGDILCGKITP
KGESPMTPEEKLLRAIFGEKASDVRDTSMRVPPGVQGTIVEVRVFNRHGVEKDERAQAIE
REEIERLAKDRDDELAILDRNVYSRLSELLIGKTAISGPKGFKKDTVLTKDVLEGYPRSQ
WWIFAVEDDKLLAETEAMRKQYDEAKKGLESRFLDKVEKLQRGDELPPGVMKMVKVFVAV
KRKIQPGDKMAGRHGNKGVVSKIVPSEDMPFLADGTPVDIVLNPLGVPSRMNVGQILETH
LGWACAGLGRQVSEAVNAYMRTKNAAPLRGKLIEIYGSKKEIDALPEETLLEVGENLRRG
VPIATPVFDGAHEKDIVEMLHQAGLDSSGQVTLHDGRTGEAFDRKVTVGYIYMLKLHHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYESIVRGDDAFESGIPESFNVLVKEMRSLGLNVELTMTPKPEPEELPPAEAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcccaagccataacgcaaacattttctggccggaagcgggttcgcaagtttttcggg
caactccgcgaagtggcggagatgccaaacctcattgaagttcagaaggcgtcctacgat
cagttcctgctcgttgacgagccggcgggcggccgcccggacgagggcctcgaagcggtg
ttccgctcggtcttcccgatctccgattttgccagcgtctctctgctcgaattcgtcaaa
tatgtcttcgagccgccgaaatacgatgtcgacgaatgccgccagcgcggcatgactttt
gccgcaccgctgaaggttacgctgcgccttatcgtgttcgacgtcgaccctgagaccggg
gccaagtccgtcaaggacatcaaggagcaggacgtctatatgggcgacatgccgttcatg
acctcgaacggtaccttcgtcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcat
cgctcgccgggcgttttcttcgatcacgacaagggcaagagccattcgtcgggcaagctg
ctgtttgccgcgcgcatcattccctatcgcggctcgtggctcgacatcgagttcgacgcc
aaggacatcgtctatgcgcgtatcgaccgccgccgcaagattccggtgacgtcgctgctc
tatgcgcttggcatggacggcgaggaaatcctcagcacgttctacaacaccatcacctat
acgcgcgatggtgaaggctggcgtgtgcccttcgatccggagcggatgaagggcgtcaag
gtcagcgaagacctgatcgattccgataccggcgaagtcgcggtcgaggcgggcaagaag
ctcacgatccgctcggcccggcaattggccgagaagggcctgaaggcgatccgcgcccag
gatgcggacctgaatggccagtacatcgccaccgatctctatgatcccaacacaggcgaa
atcttcgccgaggcgggcgacgagatcacgccgaagaccctgccggccttgatcgaggca
ggtttcgccgaattgccgattctcgacatcgaccacgtcaatatcgggccgtacatccgc
aacacgctcgcggtggacaagaattcctcgcgcgaggaagctttgttcgacatctatcgc
gtgatgcgccccggcgagccgccgacgatcgatacggcggaagcgatgttccattcgctg
ttcttcgatgcggagcgctacgacctttcggctgttggccgcgtcaagatgaacatgcgc
ctcgatctcgatgcgcccgatacgatgcgcgtgctgcgcaaggccgacatcctcgcggtg
gtgaaggcgcttgttgatctgcgtgacggccgcggcgagatcgatgacatcgatcacctc
ggcaaccgccgtgtgcgctcggtcggcgaattgatggagaatcaatatcgcctcggcctg
ctgcgcatggagcgtgcgatcaaggagcgcatgtcctcggtcgatatcgacacggtcatg
ccgcaggatctcatcaacgccaagccggcggcggctgcggtgcgcgagttcttcggctcg
tcgcagctctcgcagttcatggaccagaccaacccgctctccgagatcacccataagcgg
cgtctctcggcgctcggcccgggcggtctgacgcgcgagcgcgccggcttcgaggtgcgt
gacgtccacccgacgcattacggccgcatctgtccgatcgagacgccggaaggcccgaac
atcggcctcatcaattcgctggcgaccttcgcccgcgtcaacaaatacggcttcatcgaa
gcgccttaccggcgcgtgaaggatggccaggtgaccgatgaggtcatctatctgtcggcc
atggaagagtcgaagcattacgtcgcccaggccaatgcgccgatcgatggccagcatcgt
ctgaccgaagacctcgtcgtctgccgccatgccggtgacgtgatcatggtgccgaccgag
cgcgtcgacttcatggatgtgtcgccgaagcagctcgtctcggtcgccgcggcgctgatc
ccgttccttgagaacgatgacgccaaccgcgcgctcatgggctcgaacatgcagcgccag
gccgtgcccctcgtgaaggcggatgcgcccttcgtcggcacgggcatggaagctgtcgtt
gcccgcgactcgggtgctgccatcgcggcacggcgcgccggcgtcgtcgatcagatcgac
gcgacccgtatcgtcgtgcgtgcgacggaggagcccgatccgagcaagcccggcgtcgat
atttaccggctgctgaaattccagcgctcgaaccaatcgacctgcatcaaccagaagccg
ctggtgcgtgtcggcgattacgtccgcaagggcgacatccttgccgacggtccttcgacc
gacctcggtgatctggcgctcggccgcaacgtgctcgtcgccttcatgccgtggaatggc
tacaacttcgaagattcgatcctgctcaacgagaagatcgtcaaggacgacgtcttcacc
tcgatccacatcgatgaattcgaggtgatggcgcgcgacaccaagctcgggccggaagaa
atcacgcgcgatattccgaacgtttcggaagaggcgctgaagaatctcgatgaggccggc
atcgtctatatcggtgcggaagtgcaggcgggcgacatcctgtgcggcaagatcacgccg
aagggcgagagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggtgagaag
gcgtctgacgtgcgcgatacctcgatgcgcgtgccgccgggcgtccagggcacgatcgtg
gaagtgcgcgtcttcaatcgccacggcgttgagaaggacgaacgcgcccaggcgatcgag
cgcgaggaaatcgagcggctcgccaaggaccgcgacgacgaactcgcgatcctcgaccgc
aacgtctacagccgcctttcggagcttctcatcggcaagacggcgatctccggtcccaaa
ggcttcaagaaggacacggtgctgacgaaggatgtccttgagggctatccgcgctcgcaa
tggtggatcttcgcggttgaggacgacaagctcctcgccgagaccgaggccatgcgcaag
caatacgacgaagcgaagaaggggctcgagagccgcttcctcgacaaggttgagaagctg
cagcgcggcgacgaactgccgcccggcgtgatgaagatggtcaaggtcttcgtcgcggtg
aagcgcaagattcagccgggcgacaagatggccggccgtcatggcaacaagggtgtcgtc
tccaagatcgtgccgtcggaggacatgcccttcctcgcggacggcacgccggtcgatatc
gtgctcaatccgctcggcgtgccgagccgcatgaatgtcggccagattcttgagacgcat
ctcggctgggcctgcgccggtctcggccggcaggtgagtgaggcggtcaacgcctatatg
aggaccaagaatgcggcgccgcttcgcggcaagctcatcgagatctacggctcgaagaag
gagatcgacgcgctgccggaagagaccctgctcgaggttggcgagaatctgcggcgcggc
gttccgatcgcgacgccggtcttcgacggtgcgcacgagaaggacatcgtcgagatgctg
caccaggccgggctcgacagctccggccaggtgacgctgcacgacgggcgcacgggtgaa
gccttcgaccgcaaggtgacggttggctacatctatatgctgaagctgcatcaccttgtg
gacgacaagatccacgcgcgctcgatcggaccttacagcctcgtcacccagcagcctttg
ggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaggtctgggcgctcgaa
gcctatggcgctgcctatacgttgcaggaaatgctgacggtgaagtcggacgacgttgcg
ggccgcaccaaggtctacgagtcgatcgtgcgcggcgacgatgcgttcgaatccggcatt
ccggaaagcttcaacgtgctcgtcaaggagatgcgttcgcttggcctcaatgtcgaactg
accatgacgccgaagccagagccggaagagctgccgcctgccgaggcggccgaatag
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integrated database retrieval system
