Microbacterium maritypicum: NMQ05_03940
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Entry
NMQ05_03940 CDS
T08516
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mliq
Microbacterium maritypicum
Pathway
mliq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mliq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMQ05_03940 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mliq03021
]
NMQ05_03940 (rpoC)
03400 DNA repair and recombination proteins [BR:
mliq03400
]
NMQ05_03940 (rpoC)
Enzymes [BR:
mliq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMQ05_03940 (rpoC)
Transcription machinery [BR:
mliq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMQ05_03940 (rpoC)
DNA repair and recombination proteins [BR:
mliq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMQ05_03940 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UTT53740
LinkDB
All DBs
Position
832913..836788
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDELRIGLATADHIRAWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEARHRDLGTQENNIRLELKTLGDRRDAKIAERLAKLEEE
LAALEAEGAKADAKKKVKDAAEKEMSLIRKGADEAILKLERVWEDFRTLEVGALRPEDDV
FHELQDRFGQYFEAYMGAESIQRRLAAFDLVAEAENLRLQISEGKGQRKIRAIKRLKVVS
SFLETGMSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGAAGEGR
AFGSVGEAILAKDEGSLDLQAKIRIRIPGLTFLEGEAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKNKLSQIVNKLAEEYPKVETAASLDRIKDAGFYWATRSGVTVALSDIL
TPPNKAEIVAGYEKQAAKVQSQYEKGLTTDSERRQELIKIWTEATDEVQAAMKANFPEDN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGTR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLELPIAAPNSQGELVRDANVE
NSVFARTLASDVVNESGEVLASAGDDVGDVLIDKLVGLGVESIKVRSVLTCDSAVGVCAQ
CYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGRITIDETDKGKKVILTPDSGDEPVIYPVLKRATLLVEDGQHVTV
GQPILVGTLDPKEIMRVMGAREVQRYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHADTTLLPGEMVDLKRYQAINREAVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTEAAMQGKRDPLVGLKENVIIGKLIPAGTGLSKYRDVTVEATEEAKSERYPNRI
FASDGAYADGDFGYVDFDAFSTDDITPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgagtccacaactttcgatgagcttcgcatcggcctggcgaccgcagaccacatc
cgcgcgtggtcctacggcgaggtcaagaagcccgaaaccatcaactaccgcaccctgaag
ccggagaaggatggtctcttcggagagcagatcttcggcccgtcccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagagctccgtccgtcgcgagcgcatgggtcacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgtgccctcgcgtctgggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctcggtcgac
gaggaagctcgtcaccgtgacctgggcacgcaggagaacaacatccgtctcgagctgaag
acgctcggcgaccgccgcgatgccaagatcgcggagcgcctggccaagctggaggaggag
ctcgccgctctcgaggccgagggtgccaaggccgacgccaagaagaaggtcaaggacgcc
gccgagaaggagatgtcgctcatccgcaagggtgccgacgaggcgatcctgaagctggag
cgcgtgtgggaggacttccgcaccctcgaggtcggtgccctgcgcccggaggacgacgtc
ttccacgagctgcaggaccggttcggacagtacttcgaggcctacatgggtgccgagtcg
atccagcgccgccttgcggccttcgacctcgtcgccgaggcggagaacctgcgtctgcag
atctccgagggcaagggtcagcgcaagatccgtgcgatcaagcgcctcaaggtcgtcagc
tcgttcctcgagaccggcatgagcccggccgcgatggtcctcgacgtcgtcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgaccagtgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtcttcgtcgtctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggtcgccgtggtcgccccgtcaccggtaccggaaaccgtgccctgaag
tccctcagcgacatgctgaagggtaagcagggtcgtttccgccagaacctgctcggaaag
cgtgtcgactactccggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggctctggagctcttcaagccgttcgtcatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggcggccaagcgcgccgtcgagcgcacccgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtccggtgctgctcaaccgt
gcacccacgctgcaccgtctgggcatccaggcgttcgagcctcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggctgtccacctgccgctgtcggtcgaggctcaggccgaggcccgcgtgctgatgctc
gcgtcgaacaacatcctgaagccgtctgacggtcgtccggtcaccctgccttcgcaggac
atgatcatcggcctccaccacctgaccacggtcaaggagggggcagccggtgagggacgt
gcgttcggttctgtgggcgaggcgatcctggccaaggacgagggttccctcgacctgcag
gcgaagatccgcatccgcatccccggtctgaccttcctcgagggcgaagctcccgagggc
tacgagcgtcacggtctcgtcgacgcctcgctgggtcaggcgatcttcaacgacacgctg
cccaagggctacccgttcgtccgcgagcaggctgacaagaacaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaaggtcgagacggctgcgtcgctggaccgcatcaag
gacgccggtttctactgggccacgcgctccggtgtgaccgtcgccctgagcgacatcctc
accccgccgaacaaggcggagatcgtcgccggctacgagaagcaggccgcgaaggtccag
tcgcagtacgagaagggtctgacgaccgactccgagcgtcgccaggagctcatcaagatc
tggaccgaggcgaccgacgaggttcaggccgccatgaaggcgaacttccccgaggacaac
accatcaaccgcatggtgtcgtcgggtgctcgtggtaactggctgcagatccggaacatc
gccggtatgcgtggtctggtgaacaaccccaagggtgagatcatcccgcgtccgatcatc
tcctcgtaccgcgagggtctgtcggttgcggagtacttcatcgcgacgcacggtacccgt
aagggtctggccgacaccgctctgcgtaccgccgactcgggttacctgacccgtcgtctg
gtggacgtctcgcaggacgtcatcatccgcgaagaggactgtggcacgtcgaagggcctc
gagctcccgatcgccgctccgaactcgcagggtgagctcgtgcgcgacgcgaacgtcgag
aactcggtgttcgctcgtacgctggcctccgacgtcgtgaacgagtcgggcgaggttctc
gcctcggccggtgacgacgtgggcgacgtgctgatcgacaagctcgtcggactcggtgtc
gagagcatcaaggtgcgctcggtcctgacctgcgactctgctgtcggtgtctgcgcgcag
tgctacggccgttcgctcgcgaccggtaagacggtcgacatcggagaggccgtcggcatc
atcgcggcacagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacg
ggtggttcggcatcggcggatgacatcacgcagggtcttccccgtgtgcaggagctcttc
gaggcgcgtacccccaagggcgcgtcgccgatcgccgaggccgatggccgcatcacgatc
gacgagaccgacaagggcaagaaggtcatcctcacgcccgacagcggtgacgagccggtc
atctacccggtgctgaagcgtgcgacgcttctcgtcgaggacgggcagcacgtcacggtc
ggtcagccgatcctggtgggcacgctcgaccccaaggagatcatgcgcgtcatgggcgct
cgcgaggtgcagcgttacctcgtcggcggcgtccagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtccgccagatgctccgcaaggtcaccgtc
gtcgatcacgccgacacgaccctgctgccgggtgagatggtcgacctcaagcgctaccag
gcgatcaaccgcgaggctgtggcagagggcaagcgccccgcgtcgggccgtccggagctg
atgggtatcacgaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcctccttccag
gagacgacccgcgtgctcaccgaggctgcgatgcagggcaagcgcgacccgctggtcggt
ctcaaggagaacgtcatcatcggtaagctcatccccgccggaaccggtctctcgaagtac
cgcgacgtcacggtcgaggccaccgaggaagccaagagcgagcgctacccgaaccggatc
ttcgcatccgacggcgcgtacgctgacggtgacttcggctacgtcgacttcgacgcgttc
tcgacggacgacatcacccccggcacgtataactga
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