Microbacterium maritypicum: NMQ05_12780
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Entry
NMQ05_12780 CDS
T08516
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mliq
Microbacterium maritypicum
Brite
KEGG Orthology (KO) [BR:
mliq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mliq03019
]
NMQ05_12780 (hrpA)
Enzymes [BR:
mliq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NMQ05_12780 (hrpA)
Messenger RNA biogenesis [BR:
mliq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NMQ05_12780 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_22
HA2_C
AAA_19
nSTAND_NTPase5
ResIII
T2SSE
nSTAND3
SLFN-g3_helicase
NACHT
AAA_30
PhoH
SRP54
Zeta_toxin
UvrD-helicase
AAA_SelU
Motif
Other DBs
NCBI-ProteinID:
UTT51956
LinkDB
All DBs
Position
2618188..2622138
Genome browser
AA seq
1316 aa
AA seq
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MSSPVISYPPELPVSAARAEISDAIRDHQVVIVAGATGSGKTTQLPKIALELGRERIAHT
QPRRLAARTIAERVAEELQVELGTLVGYKVRFTDKVSDTTRIALMTDGILLNEIHRDRLL
TRYDTIIIDEAHERSLNVDFLLGYLARILPERPDLKVIITSATIDPESFAKHFAAPDGTP
APIIEVSGRTYPVEIRYRGPVEDADDEAEPAEPEDEVSAIVAALRELDREAPGDVLVFLP
GEAEIRDAADAVRGAYANDRAPTEVLPLFGRLSAADQHRVFERSRVAGVRRRVILATNVA
ETSLTVPGIKYVIDTGTARISRYSNRSKVQRLPIEAVSQASANQRSGRAGRTSDGIAIRL
YSEEDYAKRPEYTEPEILRTSLASVILQMLSLGFGDITAFPFLTPPDSRGVKAAFDLLTE
LGAVEPSRRDGAPHLTRTGRDISRMPIDPRFARMLIEAGRAGSGGTVTRDVLAIVSGMTI
QDVRERPEERREEADRLHARFVDPTSDFLTLLNLWNHLREQQRELGSSAFRRLCRSEHLN
YVRVREWFDVHRQLRTLVKTPDRQRDDARTDERDATSDPDAIHRALLSGLLSQIGILDER
TAPAGRSHSPAKEPKGRRVAEYRGARGIRFSIFPGSGLRKKSPRAVIAAEIVETSRTFAR
TVAAIDPAWAEPLAGDLAKRQVTEPHWSKDAGAAVAFEKVTLFGLEIIPRRRVQFARIDR
AASRELFVRHALVEGEWDPTRIDKRVSAFWRSNAELRKRLEKLEERERRRDILAGDEAVF
RFYDERIPTDVFDVRSFESWWREAMATTPKLLVMRESDLIDDEERADQREFPTRWTQGDQ
VLGLAYRFEPGADDDGVSVVVPLPLLAQIEDRGFDWQVPGLRAELVTGLLRALPKAIRRH
VVPAADWAEKFGAELVEEGPESHGGLPPRTLKEALARRIQPLANQLVSAADFDDERVPPH
LRMNFRAVDERGRIVGSGRDLRALQAQLSDRARSSVARSIAAPARAGTPRAGRGAERGGV
ERVAAAPLEQTGLAAWTFGDLPEVLDTRVAGGVVRGYPAIVDQGKTVSVRVESTPDAAAA
ATRDGVLRLVLLGVPSPSSYVQEHLTSQEKLALAASPYPSAAALIEDCRAAVARKVIEGL
VPDGIVRNEADFARVRDAVSSVLVDELFACVSLVARILTKSRDVERGIKSQNSLALLGPL
NDIRTQLSGLLHPGFVSAAGSDRLTQFPRYLEGMLDRLKTLSSEPGKDRARMTEYERMAK
AFEDAGGTVPLPADATPALVEVRWLLEEYRVSVFAQRLGTAQPVSPQRIMKALSGR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccctgtgatctcctatcccccggagctgccggtcagtgcggccagggccgag
atctccgatgccatccgcgaccaccaggtcgtgatcgtcgccggtgcgacgggctcgggc
aagaccacgcagctgccgaagatcgcgctcgagctggggcgcgagcgcatcgcgcacacc
caaccccggcgtctcgccgcccgcacgatcgcggaacgggtagcggaagagctccaggtc
gagctgggcacgctcgtcggatacaaggtgcgcttcaccgacaaggtgtccgacaccacc
cgcatcgccctgatgaccgacggcatcctgctcaacgagatccaccgcgaccggctgctc
acgcgctacgacacgatcatcatcgacgaggcgcacgagcgctccctcaacgtcgacttc
ctgctcggctacctggcccgcatcctcccggagcgccccgacctcaaggtgatcatcacc
tcggcgacgatcgatccggagagcttcgcgaagcacttcgccgcgccggatggcaccccg
gcgccgatcatcgaggtctcgggacgcacctatccggtggagatccgctatcgcggtccg
gtcgaggatgcggacgacgaggccgagccggccgagccggaggacgaggtctcggccatc
gtcgccgcgctgcgcgaactcgaccgcgaggcgccgggcgacgtgctcgtcttcctcccc
ggcgaggccgagatccgcgatgccgccgacgccgttcgcggcgcctatgcgaacgaccgc
gcccccaccgaggtgctgcccctgttcggacgcctctccgccgccgatcagcaccgggtg
ttcgagcgcagccgggtggccggggtgcgccgccgggtgatcctcgccaccaacgtcgcc
gagacgagcctcacggtccccggcatcaagtacgtgatcgacaccggcaccgcacgcatc
tcccggtacagcaatcgctccaaggtgcagcggctgccgatcgaggccgtctcgcaggcc
tcggccaatcagcgttcgggccgcgcgggtcgaaccagcgacggcatcgccatccgcctc
tactcggaagaggactacgccaagcggccggaatacaccgagcccgagatcctgcgcacg
tctctggcctcggtcatcctgcagatgctctcgctcggcttcggcgacatcacggcgttc
cccttcctcaccccgcccgactcccgcggtgtgaaggccgcgttcgacctgctcaccgag
ctcggtgcggtcgagccgtcccgccgcgacggcgccccgcacctcacccgcacgggtcgc
gacatctcgcgcatgccgatcgacccgcggttcgcccgcatgctgatcgaagccggtcgg
gccggttccggcggcaccgtgacgcgcgacgtgctcgcgatcgtctcgggcatgacgatc
caggatgtgcgggagcggccggaggaacgccgggaggaggccgaccgtctgcacgcgcga
ttcgtcgacccgaccagcgacttcctcaccctgctgaacctctggaaccacctgcgcgag
cagcagcgcgaactcggctcgagcgccttccgccggctgtgccgctccgagcacctcaac
tacgtgcgggtgcgcgaatggttcgacgtgcatcgccagctgcgcacactcgtgaagaca
ccggaccggcagcgcgacgacgcccgcacggacgagcgcgacgcgaccagcgatcccgac
gccatccaccgcgccctgctgtcgggtctgctctcgcagatcggcatcctcgacgagcgc
accgcccctgcgggtagatcgcactcccccgccaaggagccgaagggccgccgtgtcgcg
gagtaccgcggcgcccgcggcatccgcttctcgatcttccccgggtcggggctgcgcaag
aagagcccacgcgcggtgatcgccgccgagatcgtcgagacctcgcgcacgttcgcgcgc
acggtcgccgcgatcgatcccgcctgggccgagccgctcgccggcgacctcgccaagcga
caggtgaccgagccgcactggtcgaaggatgccggcgccgcggtcgccttcgagaaggtg
acgctgttcgggctcgagatcatcccgcgtcggcgcgtgcagttcgcccgcatcgaccgg
gccgcctcgcgagagctgttcgtgcggcatgcgctcgtcgagggcgagtgggatccgaca
cggatcgacaagcgggtgagcgccttctggcgcagcaacgccgaattgcgcaaacgcctc
gagaagctcgaggagcgcgagcgccgccgcgacatcctcgccggcgacgaagccgtcttc
cggttctacgacgaacgcatccccaccgatgtgttcgacgtgcgctcgttcgagagctgg
tggcgcgaggcgatggccacgacaccgaagttgctcgtgatgcgcgagagcgacctgatc
gatgacgaggaacgagcggatcagcgcgagttcccgacccggtggacgcagggcgaccag
gtgctcggcctcgcgtaccggttcgagcccggcgccgacgacgacggtgtgagcgtggtc
gtgccgttgccgctcctcgcgcagatcgaggaccgcggcttcgactggcaggtgcccggt
ctgcgcgccgaactcgtgaccgggcttctgcgcgccctccccaaggcgatccgccgccac
gtcgtccccgcggccgattgggccgagaagttcggtgcagagctcgtcgaggaggggccg
gagtcgcacggcggcctgccgccgcgcacgctcaaggaggccctcgcccgccgcatccag
ccgctcgcgaatcagctggtctccgccgcagacttcgacgacgagcgggtgccgccgcac
ctgcgcatgaacttccgcgccgtggacgagcgcggcaggatcgtcggctcggggcgcgat
ctgcgtgccctgcaggcccagctctccgaccgcgcacgcagcagcgtcgcccgatcgatc
gccgcccccgcccgcgccggcacgccacgagcgggccgcggagccgaacgcggcggcgtc
gagcgcgtggccgccgcaccgctcgagcagacgggtctcgccgcctggaccttcggcgac
ctgcccgaggtgctcgacacccgtgtcgccggcggcgtcgtgcgggggtatccggccatc
gtcgaccagggcaagaccgtttcggtgcgcgtcgaatccacccctgatgccgcagctgcc
gccacacgcgacggcgtgctgcggctcgtgctgctgggcgttccctcgccctcctcctac
gtgcaggagcacctcaccagccaggagaagctggcgctcgccgcctcgccctacccctcc
gccgccgccctcatcgaggactgccgcgcggcggtcgcgcgcaaggtcatcgagggtctc
gtgcccgacgggatcgtgcgcaacgaggcggacttcgcgcgggtgcgcgacgcggtctcc
tccgtcctcgtcgacgagctcttcgcgtgcgtctccctggtcgcccgcatcctcaccaaa
tcccgcgacgtcgagcgcggcatcaagtcgcagaactcgctcgctctgctcggacccctc
aacgacatccgcacccagctgagcggcctgctgcaccccgggttcgtctccgccgccggc
tccgaccgtctcacgcagttcccccgatacctggaggggatgctcgaccggctgaagacc
ctctccagcgaacccggcaaggaccgcgcgcgcatgaccgagtacgagcggatggcgaag
gccttcgaagacgcgggcggcacggtcccgctccccgccgacgcgacacccgcgctcgtc
gaggtgcgctggctgctggaggagtatcgggtgagcgtcttcgcacagcgactgggcacc
gcgcagccggtgtcgccgcagcgcatcatgaaggcgctgtccgggcgctga
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