Massilia litorea: LPB04_01885
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Entry
LPB04_01885 CDS
T09729
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mlir
Massilia litorea
Pathway
mlir03030
DNA replication
mlir03410
Base excision repair
mlir03420
Nucleotide excision repair
mlir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB04_01885 (polA)
03410 Base excision repair
LPB04_01885 (polA)
03420 Nucleotide excision repair
LPB04_01885 (polA)
03440 Homologous recombination
LPB04_01885 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlir03032
]
LPB04_01885 (polA)
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_01885 (polA)
Enzymes [BR:
mlir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB04_01885 (polA)
DNA replication proteins [BR:
mlir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB04_01885 (polA)
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LPB04_01885 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB04_01885 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QOL50101
UniProt:
A0A7L9U4V2
LinkDB
All DBs
Position
complement(432629..435364)
Genome browser
AA seq
911 aa
AA seq
DB search
MQNTLLLVDGSSYLYRAFHALPDLRGPDGHPTGAMHGMVNMLRRLRADYPAAYIACVFDA
KGKTFRDDMYPEYKATRASMPPDLSKQIEPIHEVVRHMGWPILMVEGVEADDVIGTLAVQ
AAAKGMHTIVSTGDKDLAQLVNDKVTLINTMSNEKLDEAGVLTKFGVPPNRIIDYLTLIG
DTVDNVPGVNKCGPKTALKWLALHGSLDGVIENAHTITGAVGENLRSALEWLPQGRQLIT
VKTDCDLMGHVISIEESLVARPEDTDALRDFFNRYGFKTMLRELSQTPTGGPVLNSPEGA
QDTLPGMPIIKGEYELVTTWEQLDKWLALADAAELTSVDTETTSLDPMTAQMVGISLSVE
AGKGAYIPVAHRYAGVPEQLPREEVLERMRGWLENPDKPKLGQNLKYDMHIFNNHGVTLK
GIVHDTLLQSYVFESHKPHDMDTMAMRHLGYTTIPFVDVCGKGANMICFDQVELNRATEY
AAEDSDITLRLHQTMLPHVEKDAGLSFIYRNIELPTQIVLQKIERNGVLIDAAKLEAQSR
ELGARLVELEAKAYEMAGGPFNLGSPKQIGEIFFVKLGLPVIKKTATGAPSTDEEVLQKL
AEDFPLPKVLLEHRSLSKLKSTYTDKLPKMVNQSTGRVHTNYAQAVAITGRLASNDPNLQ
NIPVRTGEGRRIREAFVAPPGSVIVSADYSQIELRIMAHISGDEAMLKAFAEGVDIHRAT
AAEIFGVAPDEVDSEQRRYAKVINFGLIYGMSAFGLAQNLQIERGAAANYIDRYFARFAG
VKQYMDETRLAAKAKGYVETVFGRRLWLPEINSPNGPRRAGAERAAINAPMQGTAADLIK
LAMIAVQGWLESEKLATRMVMQVHDELVLEVPEAELELVKTKLPELMAGVAELKVPLVAE
TGVGANWEAAH
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaataccctgctgctcgtcgacggttccagctatttgtaccgcgccttccacgcc
ttgcccgacctgcgcggcccggacggccacccgaccggcgccatgcacggcatggtcaac
atgctgcgccgcctgcgcgccgactatccggccgcctacattgcctgcgtcttcgatgcg
aaaggtaaaaccttccgcgacgatatgtacccagagtacaaggcgacccgcgcctcgatg
ccgcccgacctctccaagcagatcgagccgatccacgaagtcgtgcgccacatgggctgg
ccgatcctgatggtggaaggagtggaggcggacgacgtgatcggcaccctggccgtgcag
gccgcggcgaagggcatgcacaccatcgtctcgaccggcgacaaggacctggcacagctg
gtcaacgacaaggtcacgctcatcaatacgatgagcaacgaaaagctcgacgaagccggc
gtgttgacgaaattcggcgtgccgccgaaccgcatcatcgactacctgaccctgatcggc
gacaccgtcgacaacgtgccgggcgtgaacaagtgcggcccgaagacggccctgaaatgg
cttgccttgcacggctcgctcgacggcgtgatcgaaaacgcgcacacgattaccggcgcc
gtcggcgaaaacctgcgctcggcattggaatggctgccgcagggacgccagctgatcacg
gtaaaaaccgactgcgacctgatgggccacgtgatctcgatcgaggaaagtttagtggcg
cgcccggaagacaccgatgcgctgcgcgactttttcaatcgctacggctttaaaaccatg
ctgcgcgaactgtcgcaaacgccgaccggcggcccggtcctcaattcgccggaaggcgca
caggacacgctgcccggcatgccgatcatcaagggcgaatacgaactggtgacgacctgg
gagcagctcgataaatggctggcgctggccgatgcggccgagctgacttcggtcgatacc
gaaacgacttcgctcgacccgatgacggcgcagatggtcggcatctccttgtccgtcgaa
gcgggcaagggcgcctatatcccggtggcgcaccgctatgccggcgtgccggaacagctg
ccgcgcgaagaggtgctggaacgcatgcgcggctggctggaaaacccggacaagccgaag
ctgggccagaacctgaagtacgacatgcacatttttaacaaccatggggtgaccttaaag
ggcatcgtccacgatacgctgctgcagtcctacgtgttcgagtcgcacaagccgcacgac
atggacacgatggcgatgcgccacctcggctacacgacgattcctttcgtcgacgtctgc
ggcaagggcgccaacatgatctgtttcgaccaggtcgaactgaatcgcgcgaccgagtac
gcggccgaggattccgacatcacgctgcgcctgcaccagaccatgctgccgcacgtggaa
aaggatgcgggcctgagcttcatctacaggaacatcgagctgccgacccagatcgtgctg
cagaagatcgagcgtaacggcgtgctgatcgacgccgcgaaactggaagcgcaatcgcgc
gaactgggcgcgcgcctggttgaactcgaagccaaggcctacgagatggccggcggcccg
ttcaacctcggctcgccgaaacagatcggcgagatcttcttcgtgaagctcggcctgccg
gtcatcaagaagaccgccaccggcgcgccctcgaccgacgaagaggtgctgcaaaagctg
gccgaggattttccattgccgaaggtcctgctcgagcaccgcagcctgtcgaagctgaaa
tcgacctataccgacaagctgccgaagatggtcaatcagagcaccggccgcgtgcacacc
aactacgcgcaggcagttgccatcacgggccgcctggcctccaacgatccgaacctgcag
aacatcccggtacgcaccggagaaggccgccgcatccgcgaagcttttgttgcgccgccg
ggcagcgtgatcgtctcggccgactactcgcagatcgagctgcgcatcatggcccacatc
tcgggcgacgaagcgatgctgaaggcgtttgccgaaggcgtcgacatccaccgcgcgacc
gccgcagagatcttcggcgtcgccccggacgaagtcgattccgagcagcgccgctacgcc
aaggtcatcaactttggcctgatctacggcatgagcgccttcggcctggcccagaacctg
cagatcgagcgcggcgccgccgccaactacatcgaccgctactttgcccgcttcgccggc
gtgaagcagtacatggacgagacgcgcctggcggccaaggcgaagggctatgtcgagacc
gtgttcggccgccgcctgtggctccccgagatcaactccccgaacggcccgcgccgcgcc
ggcgccgaacgggcggcgatcaacgcgccgatgcagggcacggccgccgacctgatcaag
ctggcgatgatcgcggtgcagggctggctggaatccgaaaaactcgccacgcgcatggtc
atgcaggtgcacgacgaactggtgctggaagtgccggaagccgagctggaactggtcaaa
acgaagctgccggagctgatggcgggtgtcgccgaactgaaggtgccgctggtggccgag
accggcgtgggcgcgaactgggaagcggcgcactaa
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