Massilia litorea: LPB04_07365
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Entry
LPB04_07365 CDS
T09729
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mlir
Massilia litorea
Pathway
mlir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPB04_07365 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlir03021
]
LPB04_07365 (rpoC)
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_07365 (rpoC)
Enzymes [BR:
mlir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPB04_07365 (rpoC)
Transcription machinery [BR:
mlir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPB04_07365 (rpoC)
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPB04_07365 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
BSH_YknX
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
QOL51087
UniProt:
A0A7L9U897
LinkDB
All DBs
Position
1654938..1659188
Genome browser
AA seq
1416 aa
AA seq
DB search
MKALLDLFKQVQQNESFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAYM
GAEGIRELLRSIDIHRDAEALRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMLFPDVSEVIRAYDNK
EVELATRITVRIVEYPRVAGSDEFERTVTRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISIAVDDMMIPDVKKGMIATAEA
EVKQIEQQYSSGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEPVTRRDGTEGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTTNGTHMKAMVEGGEVIEALRDRI
LGRVTGTDVVNPETQETVYPAGTLLDEDMVEEIERLGIDEVKVRTPLNCDTRYGLCAHCY
GRDLGRGSMVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGSQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGQQVKAGTALA
TWDPLTRPIITEYAGTIRFENVEEGVTVARQVDEVTGLSTLVAIDPKRRGSAGKVLRPQV
KLLNEQNQEVKIAGTEHAVTIGFQVGSLIMVKDGQAVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVAIVEAGDTDYIVGEQVERSELLEENDRMEAAGKLPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEVWEAEE
RQALLQQEKANMAAELQAMEDQQNAAAPAEHHGDAE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtacagcaaaatgaaagcttcgacgccatc
aagattggcctggcgtcgcccgaaaaaattcgttcgtggtcgttcggtgaagtcaagaag
cccgagaccatcaactatcgtaccttcaagcctgagcgtgacggcttgttctgcgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcacgctcgccaaagtgcgccgtgag
cgcatgggccacatcgaactggcctcgccaaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcatatgtcgtgaccgatcctggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgattacgccgccaagtacgaagagtacggcgacgacttcaccgcctacatg
ggcgccgaaggtatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgaagcc
ctgcgcgtggaactgaaggaatcgaaatccgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctcgaggcgttccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctcccggtcctgccgccggagctgcgtccgctcgtcccgctggatggcggccgtttc
gcgacctccgacctgaacgacctgtatcgccgcgtcatcaaccgtaataaccgcctgaag
cgcctgatggaactgcgcgcgccggaaatcattacgcgtaacgaaaagcgcatgctgcag
gaagcggtcgactcgctgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaagtcgctggctgaaatgatcaagggtaagggcggccgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgcag
ctgaaactgcaccagtgcggcctgccgaagctgatggccctggaactgttcaagccgttc
atcttcaacaagctcgaactgatgggtctggcgacgaccatcaaggcggccaagaagctg
gtcgaaatccaagaaccggtggtctgggacatcctggaagacgtcatcaaagaacacccg
gtcatgctgaaccgtgcaccaaccctgcaccgtctcggtatccaggcgttcgagccggtc
ctgatcgaaggtaaagcgatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggcagtccacgtgccgctgtcgatcgaagcgcagatggaagcg
cgtaccctgatgctggcgtcgaacaacatcctgttcccgtcgaacggcgagccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacgcgcgaggcgatcaacgcc
aagggcgagggcatgctgttcccggacgtgtcggaagtcatccgcgcctacgacaacaag
gaagtcgaactggcgacccgcatcaccgtgcgtatcgtcgagtacccacgtgttgccggc
agcgatgagttcgagcgcaccgtcacgcgttacgaaaccacggttggccgtgccatcctg
tccgagatcctgccaaagggcctgccattcagcgtgctgaaccgcgccctgaagaagaag
gaaatctcgaagctgatcaacacgtcgttccgcaagtgcggcctgcgtgcgaccgtcgtg
tttgccgacaagctgatgcagtcgggcttccgcctggcgacgcgcgccggtatctcgatc
gccgtcgacgacatgatgatcccggacgtcaagaagggcatgatcgcgaccgccgaagcg
gaagtgaaacagatcgagcagcagtacagctcgggtctggtcacggccggcgagcgttac
aacaaggtcgtcgacatctggggcaagacctccgatgaagtcggcaaggcgatgatggac
cagctgaaagtcgagccggtcacccgtcgtgacggtaccgaaggcacccaggaatcgttc
aacgcgatttacatgatggccgactcgggcgcccgtggttcggcagcccagattcgccag
ctggccggtatgcgcggcctgatggcgaaaccggacggttcgattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgcaaactcgggttacctgacccgccgc
ctggtcgacgtgacccaggatctggtggtgatcgaggacgattgcggcaccaccaacggc
acgcacatgaaggcgatggtcgaaggcggtgaagtcatcgaagcgctgcgcgaccgtatc
ctcggccgcgtgacgggcaccgatgtcgtcaatcctgaaacccaggaaaccgtgtacccg
gccggcacgctgctggacgaagacatggtcgaagagatcgagcgcctcggcatcgatgag
gtgaaagtccgtacgccgctgaactgcgacacccgttatggcctgtgcgcacattgctac
ggccgtgacctcggccgcggttcgatggtgaacagtggcgaagcagtcggcgtcgtggca
gcccagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcggcagtggcctcgtcggtcgaagccaagtcgaacggcacgatccgc
ttcacggcgacgatgcgttacgtcaccaacggcaagggttcgcagatcgtcatctcgcgt
tcgggcgaagtcctgatcacggacgaccatggccgcgagcgcgagcgccacaaggtgccg
tacggtgcgaccctgatcgtcaaggatggccagcaagtcaaggccggtacggccctggca
acctgggatccgctgacccgtccgatcattaccgagtacgccggtacgatccgcttcgag
aacgtggaagagggcgtcaccgtcgctcgccaggtcgacgaagtgaccggtctgtcgacc
ctggtcgcgatcgatccgaagcgtcgtggctcggccggtaaagtgctgcgtccgcaggtc
aaactgctgaacgagcagaaccaggaagtcaagatcgccggcaccgaacacgccgtgacg
atcggtttccaggtcggctcgctgatcatggtgaaagacggacaagctgtctcggtgggt
gaagtgctggcacgtatcccgaccgaatcgcagaagacccgcgacattaccggtggtctg
ccgcgcgttgccgaactgttcgaagcacgttcgccgaaagacgcgggcatgctggcggaa
gtcaccggtacggttgccttcggtaaggaaacgaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcacgagttcctgatcaccaaggacaagcaagtgctggtccac
gacggtcaagtcgtgaacaagggcgagatgatcgtcgatggtccggccgatccgcaggac
atcctgcgcctgctgggtatcgaagcgctggcgcgttacatcgtcgacgaagtgcaggac
gtctaccgtctgcagggcgtcaagatcaacgacaagcacatcgaagtcatcgtgcgccag
atgctgcgccgtgtggcgatcgtcgaagccggcgacaccgactacatcgtcggcgagcag
gtggagcgttcggagctgctggaagagaacgaccgcatggaagccgcgggcaagctgccg
gcaacctacgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagcgcgacggcctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattcctggc
ggtaccggtttggcattccaccgcgcccgcaaagagaaggaagtgtgggaggcggaagag
cgccaggcactgctgcagcaggagaaggcgaatatggctgccgaactgcaggcgatggaa
gaccagcagaatgcggcggctccggctgagcatcatggcgacgccgagtaa
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integrated database retrieval system
