Massilia litorea: LPB04_07715
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Entry
LPB04_07715 CDS
T09729
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
mlir
Massilia litorea
Pathway
mlir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB04_07715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_07715
Enzymes [BR:
mlir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LPB04_07715
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LPB04_07715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QOL51148
UniProt:
A0A7L9U830
LinkDB
All DBs
Position
1741543..1743036
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AA seq
497 aa
AA seq
DB search
MNAAAAVAMVAAGQPLVVSSFLEWRAVARELLVHDVAPELVTWNQVGVLDADLFSGAPDS
APSVDNVPAGLTPTKPAPHIPRALMDMLQSAACCRVPDRWAFLYRVIWRWQHGEHDVQSP
ADADGARLHAMVKAVRREEHDMHAYIRFRERPIEAGPPQFAAWFEPRHDVLPQVAEHFKH
RMGGVTWMIGTPEASVMWDGASLHHTGPLMSSAADLDDAGEALWLTYYRSIFNPARVNAQ
LMQSHIPSRFWKNLPEGAIVPAMVSNAELGARSTGQAQAVGRKSGATIPIAPADAQPERQ
QPSKLDECRRCDLWQYATQAVGGEGPKKAQIMLVGEQPGDQEDLAGKAFIGPAGKLLDRV
FEAAGLERREIYLTNAVKHFKWEPRGKRRLHKTPAQREVEACHYWLDKELASVKPKVIVA
LGATALKSVIGNGNAKLGESLGKAIRHEDRWVVTVYHPSYILRVPDEEAKHQAFKVMVDG
LKLAQSLLERPPEEPPA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcggcggccgcggttgcgatggttgccgccggccagccgctggtggtctccagc
tttctcgagtggcgtgccgtcgcgcgcgaactgctggtgcatgacgtggcgccggaactg
gtcacctggaaccaggtcggcgtgctcgatgccgacctgttctcgggtgcgccggactct
gccccttctgtcgataatgttcctgccgggttgacccccacaaaaccggcaccgcacatt
cctcgcgcgctgatggacatgctgcagtccgccgcctgctgccgcgtgcccgaccgctgg
gccttcctgtaccgggtgatctggcgctggcagcatggcgagcacgacgtgcagtcgccg
gccgacgccgacggcgcccgtctgcatgcgatggtcaaggcggtgcgccgcgaggagcac
gacatgcacgcctatatccgattccgcgagcggcccatcgaggccggtccgccgcaattt
gccgcctggttcgagccgcgccacgacgtgctgccccaggtcgccgaacatttcaaacac
cgcatgggcggcgtcacctggatgatcggcacgcccgaggccagcgtcatgtgggacggc
gcgagcctgcaccataccggccccctgatgtcgagcgcggccgacctcgacgatgccggc
gaggccctgtggctgacctattaccgcagcatcttcaatcccgcgcgcgtcaacgcccag
ctgatgcaaagccatattccgtcgcgcttctggaaaaatctgccggaaggcgcgatcgtc
ccggccatggtcagcaatgccgaactcggcgcgcgcagcaccggccaggcccaggcggtg
ggccggaaaagcggcgccacgatcccgatcgcccccgccgacgcccagcccgaacgccag
caaccgtcgaaactcgacgaatgccggcgctgcgacctgtggcagtacgcgacccaggcg
gtaggcggagaagggccgaagaaggcgcagatcatgctggtcggcgagcagccgggcgac
caggaggatctggccggcaaagcctttattgggcccgccggcaagctgctcgaccgcgtg
ttcgaggccgccggcctggagcggcgcgagatctatctgaccaatgcggtcaaacatttc
aaatgggagccgcgcggcaagcggcgcctgcacaagacgccggcccagcgcgaggtcgag
gcctgccactactggctggacaaggagctggcgtcggtgaaaccgaaggtgatcgtggcg
ctcggcgcgacggcgctgaaatcggtcatcgggaatggcaatgcgaagctgggcgagtcg
ctcggcaaggcaatccgccacgaagaccgctgggtcgtcaccgtctaccacccctcgtat
atcctgcgcgtgccggacgaggaggcgaaacaccaggcgttcaaggtgatggtcgatggc
ctgaagctggcgcagtcgctgctggaacggccgccggaagaaccgccggcgtaa
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