Massilia litorea: LPB04_09020
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Entry
LPB04_09020 CDS
T09729
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mlir
Massilia litorea
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlir03016
]
LPB04_09020
Enzymes [BR:
mlir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB04_09020
Transfer RNA biogenesis [BR:
mlir03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LPB04_09020
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QOL51377
UniProt:
A0A7L9U916
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All DBs
Position
2017752..2019785
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AA seq
677 aa
AA seq
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MNVFFEESGDFKVGTVLSTAGEAYQVELSSGKRSKVKTKDVLLQFEKPAPEVLLDEARGI
AAEVDLDFLWEVAGQEEFGFAELGAEYFGHAPLPAEAAGLVLALHNAPIYFYKKGRGRYK
AAPEQSLRAAQAGIEKKKQQALIQAGYVEELKAGTLPATMQPIVAQLLFKPDKNTIEYKA
LEAAADELQTTAPRLMLATKGFASPKDLHMGRFLFENFPRGAGFPSVAVPSAPTALPVAR
VAAFSIDDVTTTEIDDAFSVEHLDDGTVRVGVHIAAPGLAIKPDDEIDKIARARMSTVYM
PGDKITMLPDEVVNAFTLAEGTTCPALSLYAVLDPADWSTISTTTRAELVPIQSNLRHND
LDELVNEETLENGAGEYPHKMELALLWKWALKLEAGRMQKREAFGLKPEQANRVDFNFYV
EDDVVSIVRRKRGAPLDKIVAELMIFANSTWGKLLHDSGVPGIYRSQGAGSGAGWAAKMQ
VRMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQIIACAEHGVTAPLVAPFKPRDATL
FSIVSAFDAAYASYNDFQQTMERYWCLRWLGQEGVKQAEAVVLKDDVLRLTDVPLVIRLA
GMPQVARGAQVKLDIVRWDEVDLSLEARLLEVAAAPGEEIAFEEEEGDSGEAAVEEAVEA
EGAVAVVSTDDPAPAES
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtattttttgaagaatcgggcgacttcaaggtcggcacggtgttgtcgacggct
ggcgaagcctatcaggtcgaactgtcgagcggcaaacggtccaaggtcaagaccaaggac
gtcttgctccagttcgagaaaccggcgcccgaagtgctgctggacgaagccagggggatc
gccgccgaggtcgacctcgacttcctgtgggaggtggcggggcaggaagaattcggcttt
gccgagctgggcgccgagtacttcggccacgccccgttgcccgcggaggccgcgggcctg
gtgctggccctgcacaacgccccgatctatttctataaaaagggccgtggacgctacaag
gctgcgcccgagcagtcgctgcgcgcggcccaggccggcatcgaaaagaaaaagcagcag
gcactgatccaggccggctatgtcgaggaactcaaggcgggcacgctgccggccacgatg
cagccgatcgtcgcccagttgctgttcaagccggacaagaacacgatcgaatacaaggcg
ctggaagccgcggccgacgagctgcagaccaccgcgccacggctgatgctggccaccaaa
ggcttcgcctcgcccaaagacctgcacatgggacgtttcctgttcgagaacttcccgcgt
ggcgccggcttcccatcggtcgccgtgccgagcgcgccgactgcgctgcctgtcgccagg
gtcgccgccttctcgatcgacgacgtcaccaccaccgagatcgatgacgccttctcggtc
gagcacctggacgacggcaccgtgcgcgtcggcgtccacatcgccgcgccgggcctggcc
atcaagccggacgacgagatcgacaagatcgcccgtgcgcgcatgtcgaccgtctatatg
ccgggcgacaagatcacgatgctgccggacgaagtcgtcaacgccttcaccctggccgag
ggcacgacctgcccggcactgtcgctgtacgcggtcctcgatccggccgactggtcgacg
atctcgaccacgacgcgcgccgaactggtgccgatccagagcaacctgcgccacaacgac
ctcgacgagctggtcaacgaagagacgctggaaaacggggcgggcgagtatccgcacaaa
atggaattggccctgctgtggaaatgggcgctgaaactcgaagcgggccgtatgcagaag
cgcgaagccttcggtttgaagccggagcaggcgaaccgggtcgacttcaatttctatgtc
gaggacgacgtggtctcgatcgtgcgccgcaagcgcggcgcgccgctggataaaatcgtc
gccgaactgatgattttcgcgaacagcacctggggcaagctgctgcacgactccggcgtg
ccgggcatctaccgttcgcagggcgccggcagcggcgccggctgggcggcgaagatgcag
gtgcgcatggtcacccatgcggccccgcaccagggcctgggcgtcgatcaatacgcctgg
agcacgtcgccgctgcgccgctacacggacctggtgaaccagtggcagatcatcgcctgc
gccgagcacggcgtgaccgcgccgctggtcgcccccttcaagccacgcgatgcgacgctg
ttctcgatcgtctccgctttcgatgcggcgtatgcgtcctacaacgacttccagcagacg
atggaacgctactggtgcctgcgctggctgggccaggagggcgtcaagcaggccgaggcc
gtcgtgctgaaggacgacgtgctgcgcctgacggacgtgccgctggtgatccgcctggcc
ggcatgccgcaggtggcgcgcggcgcgcaagtcaaactcgatatcgtgcgctgggacgag
gtcgacctgtcgctcgaggcgagattgctcgaagtggcggcggcaccgggcgaggagatc
gcgttcgaggaagaagagggcgatagcggagaagcggcggtcgaagaggcagtcgaagcc
gaaggtgcggtggcagtggtcagcaccgatgaccctgcgccagcagaatcgtaa
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