Massilia litorea: LPB04_10085
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Entry
LPB04_10085 CDS
T09729
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mlir
Massilia litorea
Pathway
mlir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB04_10085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlir03019
]
LPB04_10085
03009 Ribosome biogenesis [BR:
mlir03009
]
LPB04_10085
Enzymes [BR:
mlir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB04_10085
Messenger RNA biogenesis [BR:
mlir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB04_10085
Ribosome biogenesis [BR:
mlir03009
]
Prokaryotic type
rRNA helicases
LPB04_10085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Flavi_DEAD
adh_short
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QOL51565
UniProt:
A0A7L9UBM0
LinkDB
All DBs
Position
2275101..2276942
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AA seq
613 aa
AA seq
DB search
MSDTPIPSFADLNLPAPIVKALKDVGYEAPSPIQAATIPLLMEGRDVLGQAQTGTGKTAA
FALPVLARIDTKQTTPQALVLAPTRELAIQVAEAFQSYAAHMKNFAVLPIYGGQSYGPQL
QALRRGVQVIVGTPGRVIDHIQKGSLDLSQLKTLVLDEADEMLRMGFIDDVEQILQQIPE
ERQIALFSATMPPAIKRIAKTYLRDPQEVTVAAKTGTADNITQRYWLVSGMQKLDALTRI
LEAEPFDGMIIFARTKLGTEELATKLQARGFAAVAINGDMAQQARERTIEQLKNGKIDIL
VATDVAARGLDVERISHVINYDVPSDPESYTHRIGRTGRAGRSGDAILFITPRERGLLKA
IERATRQTVSQLTLPTIKAVNDVRIAKFKEQIAATLAAGGLEQFRSLIEEFEQEQNVPAV
DIAAALAKLGRGDVPLLLEKQDREPKASTWEERPARTDFVERLPRAPRDDGPARAPRESG
FGSGFKKERIARAPDEGMATFRIEVGHANGVKPGNIVGAIANEANIDSKMIGRIEIYDDF
STLDLPADMPPDLIDHLKTVWVAGQQLQITRDGETPPPKKAPAKKSFGAERRYGEKPGFK
ADKPPFKKARPKA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacccccatcccatcgtttgccgacctcaacctccctgcgcccatcgtcaag
gcgctcaaggacgtcggctacgaagcaccgtcaccaatccaggccgccaccatccccctg
ttgatggaaggccgcgacgtgctgggacaggcgcagacgggcaccggcaagaccgcagcc
ttcgcgctgccggtgctggcgcgcatcgacaccaaacaaaccacgccccaggcgctggtg
ctggcaccgacgcgcgaactggcgatccaggtggccgaagccttccagagctacgccgcg
cacatgaagaacttcgccgtgctgccgatctacggcggccagagctacggcccgcagctg
caggcgctgcgccgcggcgtgcaggtcatcgtcggcaccccgggccgcgtgatcgaccac
atccagaagggctcgctcgacctctcccagctgaaaacgctggtgctggacgaagccgac
gaaatgctgcgcatgggcttcatcgacgacgtcgagcagatcctgcagcagatcccggaa
gagcggcagatcgcgctgttctcggccaccatgccgccggcgatcaagcgcatcgccaag
acctacctgcgcgatccgcaggaagtcaccgtcgccgccaagactggcaccgccgacaac
atcacccagcgttactggctggtgtcgggcatgcagaagctcgacgcgctgacgcgcatc
ctggaagccgagcctttcgacggcatgatcatcttcgcccgcaccaagctcggtaccgaa
gaactggcgaccaagctgcaggcgcgcggtttcgccgccgtcgccatcaacggcgacatg
gcccagcaggcacgcgagcgcaccatcgagcagctcaagaacggcaagatcgacatcctg
gtcgccaccgacgtcgccgcgcgcggcctggacgtcgagcgcatcagccacgtcatcaac
tacgacgtgccgtcggacccggaaagctacacccaccgcatcggccgtaccggccgcgct
ggccgcagcggcgacgcgatcctgttcatcacgccgcgcgagcgcggcctgctcaaggcg
atcgagcgcgccacgcgccagacggtctcgcaactgacgctgccgacgatcaaggccgtc
aacgacgtgcgtatcgccaagttcaaggaacagattgcggcgaccctggccgccggcggc
ctcgagcagttccgttcgctgatcgaggaattcgagcaggaacagaacgtgccggcagtc
gacatcgccgccgccctggcaaagctgggccgcggcgacgtgccgctgctgctggaaaag
caggaccgcgagccgaaggcatcgacctgggaagagcgccctgcgcgtaccgactttgtc
gagcgcctgccgcgcgcgccgcgtgacgacggtcccgcccgcgcaccgcgcgaatcgggc
tttggtagcggcttcaagaaggaacgcattgcgcgcgcaccggacgaaggcatggcgacc
ttccgcatcgaagtgggccacgcgaacggcgtcaagcccggcaacatcgtcggcgccatc
gccaacgaagccaacatcgattccaagatgatcggccgcatcgagatctacgacgatttc
agcacgctcgacctgccggccgatatgccgccggacctgatcgatcacctcaagacggtg
tgggtggccggccagcagttgcagatcacgcgcgacggcgaaacgccgccgccgaagaag
gcgcctgccaagaagtccttcggggcggagcgccggtatggcgagaaaccgggattcaag
gcggacaagccgccgttcaagaaggcgcggccgaaggcgtaa
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