Massilia litorea: LPB04_12715
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Entry
LPB04_12715 CDS
T09729
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mlir
Massilia litorea
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mlir03009
]
LPB04_12715 (rlmD)
Enzymes [BR:
mlir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LPB04_12715 (rlmD)
Ribosome biogenesis [BR:
mlir03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LPB04_12715 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_25
MTS
TRAM
Methyltransf_15
Cons_hypoth95
Methyltransf_23
Methyltransf_32
Methyltransf_11
TPMT
N6_N4_Mtase
DOT1
PCMT
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
QOL47888
UniProt:
A0A7L9TYW0
LinkDB
All DBs
Position
2852571..2853914
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AA seq
447 aa
AA seq
DB search
MQETFIEIKSLDADARGVGHLENEDGSQGKVVFVEDALPGERVSYEVKKKKKNWEAGSMV
TLQRASSMRVEPRCEHFGYCGGCSMQHLEPTAQVAMKQRTLEDNLWHLSKVKAENIMRPM
YGPTWGYRFRARLSVRHVAKKGTVLVGFHERASAFVADIKFCHILPPHLGAMLMPLRELI
GSLSIYNGVPQIEVAVGEETTVLVLRIMAPLSNKDEELLKAFADQWGIQWWLQTKGPETV
APFYPLGKELYYTLPEFGVRMPFKPTDFTQVNHQINRALVHKALTLLEVQPNDRVADLFC
GLGNFTLPLATQAREVVGIEGSAILSERALENAKANGLSEKTTFYTRNLFEATAEDLVAL
GRFDRMLIDPPRDGAIALVTALAELREGGHAEFLPQRIVYVSCGPSTLARDAGILVHRAG
YVMKKAGVVNMFPHTSHVESIGVFELA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaactttcatcgaaatcaaatccctcgacgcggatgcgcgcggcgtcggccac
ctcgagaacgaggacggctcccagggcaaggtggtctttgtcgaagacgcactgccgggc
gagcgcgtcagctacgaggtcaagaaaaagaagaagaactgggaagcgggcagcatggtc
acgctgcagcgcgcttcctcgatgcgggtggagccgcgctgcgagcacttcggctattgc
ggcggctgctcgatgcagcacctggagccgacggcgcaggtggcgatgaaacagcgcacg
ctcgaggacaacctgtggcacctgtcgaaggtaaaagccgaaaacatcatgcgtccgatg
tatggcccgacctggggctaccgcttccgcgcgcgcctgtccgtgcgccacgtggcgaag
aagggcacggtgctggtcggcttccacgagcgcgcctcggcctttgtcgcggacatcaag
ttctgccacatcctgccgccgcacctgggcgccatgctgatgccgctgcgcgagctgatc
ggttcgctgtcgatctacaacggggtaccgcagatcgaagtggcggtcggcgaggaaacg
acggtgctggtgctgcgcatcatggcgccgctcagcaacaaggatgaggagctgctcaag
gcctttgccgaccaatggggcatccagtggtggctgcagaccaaggggccggaaacggtc
gcgccgttctacccactgggcaaggagctgtattacacgctgcccgagttcggcgtgcgc
atgcccttcaagccgaccgatttcacccaggtcaaccaccagatcaaccgcgccctggtg
cacaaggcgctgacgctgctggaagtgcagccgaacgaccgcgtggccgacctgttctgc
ggcctcggcaatttcacgctgccgctggcgacgcaggcgcgcgaagtggtcggcatcgag
ggcagcgcgatcctgagcgagcgcgccctggaaaacgcgaaagcgaacggcctgtcggaa
aagacgaccttttatacgcgtaacctgttcgaggcgacggcggaggacctcgtcgccctg
ggtcgtttcgaccgcatgctgatcgatccgccgcgcgacggcgcgatcgcgctggtgact
gccctggccgagctgcgcgaaggcggccacgccgaattcctgccgcagcgcatcgtctac
gtctcgtgcggcccctcgaccctggcgcgcgacgccggcatcctggtgcaccgggcaggc
tatgtgatgaagaaggcgggcgtcgtgaacatgttcccgcacacctcgcacgtcgagtcg
atcggcgtgttcgagctggcgtaa
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