Massilia litorea: LPB04_14940
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Entry
LPB04_14940 CDS
T09729
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mlir
Massilia litorea
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlir03032
]
LPB04_14940
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_14940
Enzymes [BR:
mlir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LPB04_14940
DNA replication proteins [BR:
mlir03032
]
Prokaryotic type
DNA Topoisomerases
LPB04_14940
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LPB04_14940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Ribosomal_L40e
Motif
Other DBs
NCBI-ProteinID:
QOL48279
UniProt:
A0A7L9U1I9
LinkDB
All DBs
Position
complement(3318182..3319306)
Genome browser
AA seq
374 aa
AA seq
DB search
MTLDAQTQQDPAPLSDPPAAAKAAGLRYVHDDRPGIRREPAQEGFNYFSAKGEPIEDEAT
LKRIKSLVIPPAWTEVWICPQANGHLQATGRDARGRKQYRYHPKWRSVRDEVKYERMINF
GKALPAIRAEVDRALKLPGLPREKMLATIVYLLEATMMRVGNEEYARTNKSFGLTTLRNR
HVKVDGSEVAFSFRGKSGVYHKIKVHDRRVARIIRSTRDLPGQELFQYVGEDGETHSIDS
SDVNDYLRSITGEDYTAKDFRTWSGTVLAALALQEFEKFDSETQAKKNVVRAIESVAQKL
GNTPSVCRKCYVHPAVLDAYMEGAVIEAMRERTEQELVEDLHALQPEEAAVLAMLQQRLA
HEAEAASGNQKKAA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgacgcccagacgcagcaagaccctgcaccgctcagcgatccgcccgccgcc
gccaaggcggccgggctgcgctacgtccacgacgaccggcccggcatccggcgcgagccg
gcgcaagaaggttttaattacttctcggccaagggcgagccgatcgaggacgaggcgacc
ctgaaacgcatcaagtcgctcgtcatcccgccggcctggaccgaggtctggatctgcccc
caggccaacggccacctgcaggcgaccgggcgcgatgcgcgcgggcgcaagcaataccgc
taccacccgaaatggcgcagcgtgcgcgacgaggtgaagtacgagcggatgatcaatttc
ggcaaggccctgcccgcgatccgggccgaagtggaccgcgccctgaaactgcccggcctg
ccgcgcgaaaaaatgctggcgaccatcgtctacctgctcgaggcgaccatgatgcgggtc
gggaacgaggaatatgcgcgcaccaacaaatccttcgggctgaccaccctgcgcaaccgc
cacgtgaaagtcgacggcagcgaggtcgccttctctttccggggcaagagcggcgtctac
cacaagatcaaggtgcacgaccggcgcgtggcgcgcatcatccgcagcacgcgcgacctg
cccggccaggaactgttccagtacgtgggcgaagatggcgagacacacagcatcgattct
tccgacgtcaacgattacctgcgcagcattaccggcgaagactatacggccaaggatttc
cgtacctggtcgggtacggtgctggccgccctcgccctgcaggaattcgagaagttcgat
tccgaaacccaggccaagaagaacgtcgtgcgcgccatcgagtcggtggcgcaaaaactc
ggcaacacgccctcggtctgccgcaagtgctatgtgcatccggccgtgctcgacgcctac
atggaaggcgccgtgatcgaggccatgcgcgaacgcaccgaacaggagctggtcgaagac
ctgcacgcgctccagcccgaggaagcagccgtgctcgccatgctgcagcagcgcctggcg
cacgaggccgaagccgcctcgggcaaccagaagaaggctgcctga
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