Massilia litorea: LPB04_15160
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Entry
LPB04_15160 CDS
T09729
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mlir
Massilia litorea
Pathway
mlir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LPB04_15160 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_15160 (recB)
Enzymes [BR:
mlir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LPB04_15160 (recB)
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LPB04_15160 (recB)
BRITE hierarchy
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
DUF4159
Motif
Other DBs
NCBI-ProteinID:
QOL48314
UniProt:
A0A7L9TZW3
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All DBs
Position
3372245..3375895
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AA seq
1216 aa
AA seq
DB search
MSQLLDALTFPLHGSRLIEASAGTGKTWTIAALYLRLVLGHGGADAFARPLLPSQILVMT
FTRAATRELANRVRERLVGAAAYFRGEAKESDPYLEALASSYDSDSERQVAAHRLVLAAE
TMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELVSDERALFEDAAHDYWRQHVYPLNAAG
LGAVLACWRDVEAMKAAVRDLVGRTATLGMPDAEPLAALVARVQRSQQAELARLKEGWHE
RAGEMERWIAQQQERNPKAFNGNKMRAASVPTWFEALRAWAADAALVEPDMNETAWKRLT
PHGIEDAFGKDFHAVVPDCFACTEDLRAALDTIQPLAHALLRHAAGHIAQRMAELKTRNR
QFGFADMLARLKEALEGGNGEALRQRIVTQFPVALIDEFQDTSPDQYRIFNLLYRVEAND
PEQGLFLIGDPKQSIYGFRGADIHSYLAARIATEGRHYQLGTNYRSTSALVEAVNQLFRY
AEGHGEHPGHAAGAFRFRRGNINPLPFDAVRAAGRGAHLVGVDGPYQALAMCTTDGEEMK
AEEYRSFFANHCAEHIVSLLNDPQVGFAEPDPEGLGGRFVRLQPADIAVLVRDRKEASAV
RQALARRKVASVYLSDKDSVVESEEAADVLRWLYAVASPLDGTLARAALATRTADLPLGE
LAKLSGDETVWEERVEQLKALHATWQRQGVLAMLRRFIHELGLPARLLREPGGERRLTNL
LHLAELLQEASTQLDGEQALIRWFAEQIEGLGEGGDERVLRLESDAELVKVITVHKSKGL
EYPLVYLPFAATARKTDKRRRSFFEYVLEDGSRHIDLALSEEAMQAVDRARLEEDLRLLY
VALTRARHFLWLGVAAVATRQKGENMLHESALGYLLSGGSPVPTSAIGDHLARLRGGCAG
IELHTLAPQDGCTMLNRVEERPALVEAAPFEADFERNWAVGSFTSITRHTTAPPMRALEE
TLLEDEEPAPPLVPRLEDAPWHRFPRGSVPGNFLHEQLEWIGQEGFDSIDDPNFDARLAQ
RIERAGWGHRLDDAIAWLRTVVATRLPPIGASLSELTETVPEMEFWFPSEGLDLGALDRL
CRRRLLGKAARPLLPERELHGMLKGFADLVFEHEGRYWVLDYKSNALGPNDAAYTKRAME
EGMAGHRYDIQGAIYMLALHRLLKSRLGENYDPAQQLGGAVFLFLRGIANTSTHGCCLLE
PDVELLDGLDQLLGRG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagccagctgctcgacgccctcacgttcccgctgcacggctcgcgcctgatcgaggcc
agcgccggcacgggtaaaacctggaccatcgcggcgctctacctgcgcctggtgctcggc
cacggcggcgcggatgcttttgcccggcccttgctgccctcgcagatcctggtgatgacc
tttacccgcgccgccacgcgcgagctggccaaccgcgtgcgcgagcgcctggtcggcgcc
gcggcctatttccgcggcgaggcgaaggagtccgatccttacctggaagcgctcgccagc
agttacgacagcgacagcgagcgccaggtcgcggcgcaccgcctggtgctggccgccgag
acgatggacgaagcggcgatcttcaccatcgacgcctggtgccagcgcatgctgcgcgag
cacgccttcgacagcggcagcctgttcgacgaggaactggtcagcgacgagcgcgccctg
ttcgaagacgcggcccacgattactggcgccagcacgtctatcccctgaacgccgccggc
ctgggcgcggtgctggcctgctggcgcgacgtagaggccatgaaggcggcggtgcgcgac
ctggtcgggcgcaccgccacgctcggcatgccggacgccgagccgctggcggcgctggtc
gcgcgcgtgcagcgcagccagcaggccgaactcgcgcgcctgaaagaaggctggcacgag
cgcgccggcgagatggagcgctggatcgcacagcagcaggaacgcaatcccaaagccttc
aacggcaacaagatgcgtgccgcttcggtgcccacatggttcgaagcactgcgcgcctgg
gccgccgacgctgcgctggtcgagccggacatgaacgagacggcctggaagcgcctgacg
ccgcacggaatcgaggacgccttcggcaaggacttccacgccgtggtgccggactgcttc
gcttgtaccgaagacctgcgcgcggccctcgacacgattcaaccgcttgcgcacgcgctg
ctgcgccacgcggccggccacatcgcccagcgcatggcggaactcaagacgcgcaatcgc
cagttcggtttcgccgacatgctggcgcgcctgaaggaggcgctggaaggcggcaacggc
gaggccctgcgccagcgcatcgtgacccagttcccggtcgcgctgatcgacgaattccag
gacacctcgcccgaccagtaccgcatcttcaacctgctgtaccgggtcgaggcgaacgat
ccggagcagggcctgttcctgatcggcgacccgaagcagtcgatctacggcttccgcggc
gccgacatccacagctacctggcagcccgcatcgccaccgaaggccggcactaccagctc
ggcaccaactaccgttcgaccagcgcgctggtggaggcggtgaaccagctgttccgctat
gccgaaggccatggcgagcaccccggccatgcggccggcgccttccgcttccggcgcgga
aacatcaatccgctgcctttcgatgcggtacgcgcggccggccgcggcgcgcacctggtc
ggcgtcgacggaccctaccaggcgctggcgatgtgcaccacggacggggaggagatgaag
gccgaggagtaccgcagcttcttcgccaatcactgcgccgagcacatcgtctcgctgctg
aacgacccgcaggtcggtttcgccgaacccgaccccgaggggctgggcggccgcttcgta
cgcctgcagccggccgatatcgcggtgctggtgcgcgaccgcaaggaagcaagcgcggtg
cgccaggcgctggcacggcgcaaggtcgccagcgtctacctgtcggacaaggattcggtg
gtcgaaagcgaagaggcggcggacgtgctgcgctggctgtacgcggtcgccagccccctc
gacggcaccctggcgcgcgccgcgctggccacgcgcacggccgacctgcccctgggcgaa
ctggcgaaactctcgggcgacgagaccgtctgggaagagcgcgtcgagcaattgaaagcc
ctgcatgcgacctggcagcgccagggcgtgctggcgatgctgcgccgcttcatccacgaa
ctcggcctgccggcgcgcctgttgcgcgagccgggcggcgagcggcgcctgaccaacctg
ctgcacctggccgagctgctgcaggaagcgagcacccagctcgacggcgagcaggccctg
atccgttggttcgccgaacagatcgaggggctgggcgagggcggcgacgagcgcgtgctg
cgtctggaaagcgacgccgagctggtcaaggtgatcaccgtgcacaagtcgaagggcctg
gagtatccgctggtgtatctgccgttcgcggccaccgcgcgcaagacggataaacgcagg
cgcagcttcttcgagtacgtgctggaagacggcagccggcacatcgacctggccctgtcg
gaggaagcgatgcaggcggtggaccgggcgcgcctggaggaagacctgcgcctgctgtac
gtggcgctgacgcgcgcgcgccacttcctgtggctgggcgtggcggcggtcgccacccgc
cagaagggcgagaacatgctgcacgaatccgcgctcggctacctgctcagcggcgggtcg
ccggttccgaccagcgccatcggcgaccacctggcacgcctgcgcggcggctgcgccggc
atcgagctccatacgctggccccgcaggacggctgcacgatgctcaaccgggtcgaagaa
cggccggcgctggtggaggcggcacccttcgaggccgacttcgagcgcaactgggcggtc
ggctcgtttacctcgatcacgcgccacacgacggcgccgccgatgcgcgcgctggaggaa
accctgctcgaggacgaggagcccgcgccgccgctggtgccgcgactcgaggacgcgccc
tggcaccgcttcccacgcggttcggtgcccggcaacttcctgcacgagcaactcgagtgg
atcgggcaggaagggttcgacagcatcgatgacccgaacttcgacgcgcgcctggcgcag
cgcatcgagcgcgcgggctggggccaccgcctggacgatgccatcgcctggctgcggacc
gtggtcgcgacgcgcctgccgccgatcggcgccagtctcagcgaactgaccgagaccgtg
ccggaaatggaattctggttcccgagcgagggcctggacctgggcgcactcgatcgcctg
tgccggcgcaggctgctcggcaaggctgcccgtccgcttctccccgagcgcgaactgcac
ggcatgctcaagggctttgccgacctggtgttcgaacacgaaggccggtactgggtgctc
gactacaaatcgaatgcgctggggccgaacgacgccgcctacacgaagcgtgcgatggaa
gagggcatggccgggcaccgctacgacatccagggcgcgatctacatgctggcgctgcac
cgcctgctcaagagccgcctcggcgagaactacgatccggcgcagcagctgggcggcgcc
gtgttcctgttcctgcgcgggatcgccaacacctcgacgcacggctgctgcctgctcgaa
ccggacgtcgaactgctcgacggcctggaccaactgctcgggaggggctag
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integrated database retrieval system
