Massilia litorea: LPB04_18335
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Entry
LPB04_18335 CDS
T09729
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
mlir
Massilia litorea
Pathway
mlir03030
DNA replication
mlir03430
Mismatch repair
mlir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB04_18335
03430 Mismatch repair
LPB04_18335
03440 Homologous recombination
LPB04_18335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mlir03032
]
LPB04_18335
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_18335
Enzymes [BR:
mlir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB04_18335
DNA replication proteins [BR:
mlir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LPB04_18335
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LPB04_18335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DUF1059
Motif
Other DBs
NCBI-ProteinID:
QOL48890
UniProt:
A0A7L9U1R2
LinkDB
All DBs
Position
complement(4063666..4064304)
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AA seq
212 aa
AA seq
DB search
MSIFERPIVMLDFETTGLSPAMGDRITEVAALRIVGGQVTERYVSLVNCGARIPAFITGL
TGITQEMVDSAPPARQVVPELLDFIGGDTLSAHNASFDEKFLLAEAERLGRGCGHDGLVC
SLKLSRRVFPGMPSYKLGTLSRQLGIAFRSAAHRAEADAEVAAEVLIHIGRHIGSSYGLS
QVAPDLLVSINKLAASKVPTWLGKYAVEKKTR
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgtccatatttgaacgccccatcgtgatgctcgacttcgagaccacgggtttgtcgccc
gccatgggcgaccgcatcaccgaggtcgcggctttacgcatcgtcggcgggcaggtcacc
gagcgctatgtctcgctcgtgaactgcggcgcgcgcatcccggcttttattacgggtctc
accggtatcacccaggagatggtcgattcggcgccgcccgcgcgccaggtggtgccggaa
ctgctcgacttcatcggcggcgatacgctgtcggcgcataacgccagcttcgacgagaag
ttcctgctggcagaagccgagcgcctcggccgcggctgcggccacgatggcctggtctgc
tccttaaagctgtcgcgccgcgtgttccccggcatgccgagctataaactgggcacgctc
tcgcgccagctcggcatcgctttccgcagtgcggcccaccgggccgaggccgatgccgaa
gtcgcggctgaagtgctgatccatatcgggcgccacatcggcagctcctacgggttgtcc
caggtcgcgccggacctgctggtgtcgatcaacaagctggcagcaagcaaggtgccgacc
tggctcggtaaatacgctgtggaaaaaaagacgcgctag
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