Massilia litorea: LPB04_20435
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Entry
LPB04_20435 CDS
T09729
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mlir
Massilia litorea
Pathway
mlir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LPB04_20435
09124 Replication and repair
03420 Nucleotide excision repair
LPB04_20435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlir03021
]
LPB04_20435
03036 Chromosome and associated proteins [BR:
mlir03036
]
LPB04_20435
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_20435
Enzymes [BR:
mlir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LPB04_20435
Transcription machinery [BR:
mlir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LPB04_20435
Chromosome and associated proteins [BR:
mlir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LPB04_20435
DNA repair and recombination proteins [BR:
mlir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LPB04_20435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QOL49249
UniProt:
A0A7L9U4A9
LinkDB
All DBs
Position
4563836..4566088
Genome browser
AA seq
750 aa
AA seq
DB search
MSYVVAVRALCEFTAKRGDLDLRFTPSPTAQEGIAGHAVVTARRGEGYQTEVTLAGDHGP
LHVRGRADGYDPAQNLIEEIKTYRGQLSSMPDNHRHLHWAQLRVYGHLLCAARGLEQVNL
ALVYYEIGSGLETSLRETRSALELKTMFEEACGRFVEWAEQELRHREARDAALAELRFPH
ADFRPGQRQLAETVFKANASSRCLLAQAPTGIGKTIGSLFPVLKAAPAQRIDKIFFLAAK
TPGRQLALDAAGAIRAHAPYLPLRVLELTARDKACEHPDKACHGDSCPLAQGFYDRLPAA
RQAALSVPVLDRAALREVGLAHDVCPYYLGSEMARWTDVVVGDYNYYFDGSAMLYALAQA
NGWRASVLVDEAHNMVARARSMYSCELDRVALRAARAAAPPLIKKALSKIGKVWSEIDEA
APLPYQVLDAPGEKLLNALTNATSTINDFVAEQPGPLDPALQRFHFDAMQFARLAESFGE
HSLVDLTRTGKDSVLCIRNVVPAPFLKPRFEGAHSVTLFSATLSPWHYFADLLGLPGNTG
WVDVESPFRAGQLKVHIAARISTRYQHRTASLAPIAHLMAGQYAQAPGNYLAFFSSFDYL
EQAANLFAELHPEVPVWRQERRMSELERAAFLDRFHPDGRGIGFAVLGGSFGEGIDLPGA
RLIGAFVATLGLPQLNPVNEQLKARMQAMFGAGYDYTYLYPGLQKVVQAAGRVIRTELDQ
GVVYLIDDRFDQPAVRELLPRWWQVDRLLT
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
ttgagttatgtcgtggcggtgcgggcgctgtgcgaattcacggccaaacgcggtgacctc
gacctgcgcttcacgccttctcccaccgcccaggaaggcatcgccggccacgccgtcgtc
accgcgcgccgcggagaaggctaccagaccgaggtcacgctggcgggcgaccatggcccg
ctgcacgtgcgcggccgcgccgacggctacgacccggcgcagaacctgatcgaagagatc
aagacctaccgcggccagctatcctcgatgccggacaaccaccgccacctgcactgggcc
cagctgcgcgtctacggccacctgctgtgcgccgcgcgcgggctggagcaagtcaacctc
gcactcgtctactacgaaatcggcagcggcctcgagacctccctgcgcgaaacgcgcagc
gcgcttgaactgaaaaccatgttcgaggaagcctgcggacgcttcgtcgaatgggccgaa
caggaactgcgccaccgtgaagcgcgcgacgcggcgcttgccgagctgcgctttccgcac
gcggacttccgcccgggccagcgccagctcgctgaaaccgtattcaaggcgaacgctagc
tcccgctgcctgctggcccaggcgccgaccggcatcggcaagaccatcggcagcctgttc
ccggtgctgaaagcggcgcctgcccaacggatcgacaagatattcttcctcgccgcgaag
accccgggccgccagctggcactcgacgccgccggggcgatccgcgcccacgccccctat
ctgccgctgcgcgtgctcgaactgaccgcgcgcgacaaggcctgcgagcaccccgacaaa
gcctgccatggcgactcctgccccctggcgcaaggtttttacgatcgcctgcccgccgcg
cgccaggcagcgttgagcgtaccggtgctcgaccgcgccgccctgcgcgaggtcggcctc
gcgcacgacgtctgcccctattatctcggcagcgagatggcgcgctggaccgatgtcgtc
gtgggcgactataactattatttcgacggcagcgcgatgctgtacgcgttggcccaggcc
aacggctggcgcgccagcgtgctggtcgacgaggcacacaacatggtggcgcgggcgcgt
tcgatgtactcctgcgaactcgatcgcgtggccctgcgcgccgcccgcgcggcggcacct
cccctgatcaaaaaggccttgagcaagatcggaaaggtctggagcgagatcgacgaagcc
gccccgctgccctaccaggtgctcgatgcgcccggcgagaagctgctcaacgcgctgacc
aacgcgaccagcaccatcaacgacttcgtcgccgaacaaccgggtccgctcgacccggcc
ctgcagcgctttcatttcgatgcgatgcagttcgcgcgcctggccgaatccttcggcgag
cattccctggtcgacctgacgcgcacgggcaaggacagcgtgctctgcatccgcaacgtg
gtgccggcgcccttcctgaagccccgcttcgagggcgcgcactcggtgacgctgttctcg
gccacgctcagcccctggcattatttcgccgacctgctcggcctgcccgggaacacgggc
tgggtggacgtcgagtcgcccttccgtgccggccagctgaaggtccacattgcggccagg
atctcgacccgctaccagcaccgcacggcttccctggcgccgatcgcgcacctgatggcc
ggccagtatgcgcaggcgcccggcaactacctcgccttcttcagcagtttcgactacctc
gagcaggcggcaaacctgttcgccgagctgcatcccgaggtgccggtctggcgccaggaa
cggcgcatgagcgaacttgagcgcgcggcttttctcgaccgcttccaccccgacggacgc
ggcatcggtttcgccgtgctgggcggctcctttggcgaaggcatcgacctgccgggcgcg
cgcctgatcggcgctttcgttgccaccctcggcctgccgcaactgaacccggtgaacgag
cagctcaaggcgcgcatgcaggcgatgttcggcgccggctacgattacacctatctgtat
ccgggcctgcagaaggtggtgcaggccgccgggcgcgtgatccgcaccgagctcgatcag
ggcgtggtctacctgatcgacgaccgtttcgaccagccggcggtgcgcgagctgctgccg
cgctggtggcaggtcgaccggctcctcacctga
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