Massilia litorea: LPB04_22980
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Entry
LPB04_22980 CDS
T09729
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mlir
Massilia litorea
Pathway
mlir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mlir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LPB04_22980 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlir03400
]
LPB04_22980 (sbcB)
Enzymes [BR:
mlir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LPB04_22980 (sbcB)
DNA repair and recombination proteins [BR:
mlir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LPB04_22980 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LPB04_22980 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPB04_22980 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF7540
Thymidylat_synt
Motif
Other DBs
NCBI-ProteinID:
QOL49702
UniProt:
A0A7L9U617
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All DBs
Position
5118192..5119640
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AA seq
482 aa
AA seq
DB search
MSTHTFLWHDYETFGAQPRRDRPAQFAAIRTDAELNEIGEPLMLFCQPANDYLPDPQSCL
ITGITPQQCLELGVPEHEFARQIEAAFAEPGTIGVGYNTIRFDDEVTRFLFWRNLLDPYA
REWQNNCGRWDLLDVVRMTYALRPEGIEWPTHPDGRPSFRLEDLTRANGLSHEAAHDALS
DVRATIALARLIRNKQPRLFDFCLELRRKDKVASEMGLHLERAARQPFLHVSGMFPVENG
CLALVWPLAQHPSNKNEILVWDCRHDPSELFSLDVETIRLRMFTRSADLPEGVTRLPIKS
VHLNKSPMLVGNLKTLSPAMATRWGLDLDQAKAHAQLAANGPDMAAIWAQVYQKPASGNE
TDVDEDLYGGFVSNNDRRKLESLRMQTPAQLATSRPSFEDERLAELLWRYRARNFPQTLS
EQEMESWEEHRAARLFDGAGGARTVDQLFGEIDALSETADERAEEILGALYEYVEAIAPS
RY
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacacactttcctctggcacgactacgaaaccttcggcgcccagccgcgccgc
gatcgtccggcgcagtttgccgcgatccgcaccgatgccgagctcaacgagatcggcgaa
ccgctgatgctgttctgccagccggccaacgattacctgccagatccgcagtcctgcctg
atcacgggcatcacgccgcagcaatgcctcgaactgggggtgcccgagcacgaattcgcg
cgccagatcgaggcggcgttcgccgagccggggacgatcggcgtcggctacaacacgatc
cgcttcgacgacgaagtcacgcgcttcctgttctggcgtaacctgctcgacccgtatgcg
cgcgaatggcagaacaattgcggccgctgggatctgctcgacgtcgtgcgcatgacctat
gcgctgcgtccggaaggcatcgaatggccgacgcatccggatggacgtccgagcttccgc
ctcgaggacctgacccgcgccaacggcctgtcgcacgaggcggcgcacgacgcgctgtcc
gacgtgcgcgccacgatcgcactggcgcgcctgatccggaataaacagccgcgcctgttc
gacttctgcctcgaactgcggcgcaaggacaaggtcgccagcgaaatgggcctgcacctg
gaacgcgcagcgcgccagcccttcctgcacgtatcgggcatgttcccggtcgagaacggc
tgtctggctctggtctggccactggcccagcatccgagcaacaagaacgaaatcctggtg
tgggattgccgtcacgatccgtcggaactgtttagtctggatgtcgagacgatccggctg
cgcatgttcacgcgcagcgccgacctgccggaaggtgtcacgcggctgccgatcaagagc
gtccacctgaacaagtcgccgatgctggtcgggaacctgaagaccctgagcccggcgatg
gcgacgcgctggggcctcgacctcgaccaggccaaagcccacgcgcagctggcggcgaac
gggcccgacatggcggcgatctgggcgcaggtgtaccagaagccggcctccggcaacgag
accgatgtcgatgaagacctgtatggcgggttcgtcagcaacaacgaccgccgcaagctc
gaatccctgcgcatgcagacgcctgcacagctggccacaagccggccttcgttcgaggac
gagcggctggccgaactgctgtggcgctaccgggcacgcaatttcccgcagacgctaagc
gagcaggagatggagagctgggaagaacaccgcgcggcgcggctgttcgatggagcgggc
ggggcacgcacggtggaccagttgtttggggagatcgatgcgctgtcggagacggcggac
gagcgcgccgaggagatcctgggtgccttgtacgaatacgtcgaagcgattgcgccgagc
aggtattaa
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