Metabacillus litoralis: KDJ21_002190
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Entry
KDJ21_002190 CDS
T08411
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mlit
Metabacillus litoralis
Brite
KEGG Orthology (KO) [BR:
mlit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mlit03009
]
KDJ21_002190 (rlmD)
Enzymes [BR:
mlit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KDJ21_002190 (rlmD)
Ribosome biogenesis [BR:
mlit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KDJ21_002190 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_25
Methyltransf_15
PrmA
Methyltransf_11
TehB
Motif
Other DBs
NCBI-ProteinID:
UHA60567
LinkDB
All DBs
Position
complement(410837..412240)
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AA seq
467 aa
AA seq
DB search
MKEKKQAQTSQIKISKGQTFPLTIKRLGINGEGVGYFKRQVVFVPGALPGEEVLVEATKI
QPKFAEGKVKTIRKKSPFRVKPPCPIYEECGGCQLQHLAYDQQLKEKRDIVVQSMERHTK
LKISSLDIRQTIGMEDPWNYRNKSQFQVGQQKGKVIAGLYGLDSHRLIPIQNCMVQHPLT
NKVSEGVKQILEDFQVPIYDERKRKGIVRTIVTRAGFQTGEVQVVLITTQKEVPRKKLIM
AEIQKRFPEVKSLVQNINGNKTSLIFGEKTLHLSGEEVIQETLGDLSFELSARAFFQLNP
VQTVKLYDEVKNAASLTGNEKIADAYCGVGTIGLWLAKGASEVRGMDTIEAAVIDAQENA
HRHGIENATYVTGTAEHWLPKWVEEGWRPDVVVVDPPRTGCDQKLLDAIRKVKPKKFVYV
SCNPSTLAKDIDYLSKDYKVEYIQPVDMFPHTAHVECVSQLVLRNGN
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaagaaacaggcgcaaaccagccaaattaaaatttcaaagggacaaactttc
ccgctaacaataaagcgtttagggattaatggtgaaggtgtaggctactttaaacgacaa
gttgtctttgtccctggagcactgcctggtgaagaagtattagtagaagcgactaagatt
caaccaaagtttgcggagggaaaagtaaaaacaatacgaaagaaatccccattccgtgtt
aagccgccttgtccaatttacgaggaatgtggtggctgtcagcttcaacatttagcctat
gatcagcaactgaaggaaaagcgtgatattgttgttcaatctatggagagacatacaaaa
ttaaaaatctcctctttggatattcgtcagactatcggtatggaagacccgtggaactac
cgaaacaaaagtcaatttcaagttgggcagcaaaagggcaaagtaattgcagggctatac
gggttggattcacaccgccttattcctattcaaaattgtatggttcagcatccactaaca
aataaggtatctgaaggggtaaagcaaattctcgaagacttccaagtgccaatttatgat
gaacgaaagagaaaagggattgtaagaactattgtgacacgtgccggttttcaaacagga
gaagtacaggtcgttttaattacaacacaaaaagaagtaccgcgtaaaaagttaattatg
gctgaaatccaaaaaaggtttcctgaagtaaaatctcttgttcagaatataaatggaaac
aaaacatcccttatttttggagaaaaaacattacatctaagtggagaagaagttattcag
gaaacgttaggggacttgagcttcgaactttcagcaagagcattctttcaactgaatcct
gttcaaactgtaaagctttatgatgaagtaaagaatgcagcaagccttaccggcaatgaa
aaaattgctgatgcatattgcggagtaggaacaattggcttgtggttagcaaagggtgcg
agtgaagtgcgaggaatggatacaattgaagcagctgttattgatgcacaagaaaatgct
catagacacggtattgaaaatgcaacctatgtaacaggcactgcagagcactggctgcca
aaatgggtggaggaaggctggcgaccagacgttgttgtggtggatcccccacgtacgggc
tgtgatcagaaattattagatgcgattagaaaagtgaagccgaagaaatttgtttatgtt
tcatgcaatccttccacacttgcgaaggatattgattatttgagtaaggactataaagtt
gagtatattcagcctgtggatatgtttccgcatacggcgcacgtggaatgtgtttcacag
cttgtactaagaaatggtaactaa
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