Metabacillus litoralis: KDJ21_002945
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Entry
KDJ21_002945 CDS
T08411
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mlit
Metabacillus litoralis
Brite
KEGG Orthology (KO) [BR:
mlit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mlit03009
]
KDJ21_002945 (rlmD)
Enzymes [BR:
mlit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KDJ21_002945 (rlmD)
Ribosome biogenesis [BR:
mlit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KDJ21_002945 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
TRM5-TYW2_MTfase
Ubie_methyltran
Methyltransf_11
PrmA
Methyltransf_4
Cons_hypoth95
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
UHA60706
LinkDB
All DBs
Position
complement(568173..569564)
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AA seq
463 aa
AA seq
DB search
MTLTKAETMIAEIHHLDDRGSGQAVIWRENELGNPKKLKLTIPQTLPGEKVRVTVDQPER
RRRKVLPEEILEAHSDRMAPPCPHFDKCGGCVWQHWQYTAQLKQKTEHVKHAIEEQGFNP
ELVKETIGMDQPWHYRNKMEFTFAPDGSLGLHEQGNFRKVISLESCLIASKEMVEAAMEV
AAWVKDHQLNGYNKDTHEGLLRHLMVRQSFATGEMMLGLFATEGPNDTLQKAVDDLVSRI
ESKHPQVKSLLWLENTQWADRTQSEKSHTLAGRDFIYDEMDGYRFRLWFDTFFQTNPTQA
QKLVDLAIEMGQPKKSESMIDLFCGVGTFSLPFANRVGKLAGIEIVESSIESAKRNASDN
GISNTYFLAKDARKGIDQVLETFGSPELLLLDPPRSGAGGKVMRRIGRSKPERIVYVSCN
PDTFATDIKELEQFDYELKIVQPVDLFPHTVHVECCALLELAD
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
ttgaccttgactaaagcagaaacaatgattgctgaaatacatcatttagatgacaggggt
tcaggacaagccgttatttggcgggaaaacgaacttggtaatccgaagaagttaaaacta
accattccacaaacacttccaggggagaaggtacgtgtaacagttgatcaaccagaaaga
agaagaagaaaggttctacctgaggagatcctagaagctcattctgatagaatggcacca
ccatgtcctcattttgataaatgtggtggatgtgtgtggcagcattggcaatacacagcc
caattaaaacaaaaaactgagcatgtaaaacatgcaatcgaggaacaaggatttaatcct
gagctagttaaagaaacaattggcatggatcagccttggcactatcgcaataaaatggag
tttacatttgctcctgatggatctcttgggttgcatgagcaagggaatttccgtaaagta
atctcgcttgaatcttgcttaattgcaagtaaagaaatggtcgaggctgctatggaggta
gcagcttgggtaaaagatcatcaactaaatggctacaataaagatacccacgaaggattg
cttcgtcatttaatggttcgacaatcttttgcaacgggagaaatgatgctggggcttttt
gcaacagaaggaccaaatgatacacttcaaaaggctgtggatgatttggtttctagaatt
gagtcaaagcatccacaggtaaaaagcttgttatggcttgaaaatacacaatgggcagat
cgtacacagtctgaaaaaagtcatactttagcaggacgagatttcatttatgatgaaatg
gatggctaccgtttccgtctgtggtttgatacattctttcaaacaaatccaactcaagct
caaaagctagttgatttagccatcgaaatgggccaaccaaaaaaatcagaaagcatgatt
gatcttttctgtggtgttgggacattctctctcccatttgcaaatagagtcggaaaactt
gcgggtattgaaattgtagaaagctctattgaatcagctaaaagaaatgcaagtgacaat
ggaatatctaatacgtatttcttagctaaggatgccagaaaaggaattgatcaagtacta
gaaacgtttggcagccctgagcttctccttttagatcctcctcgatcaggtgctggtgga
aaagtaatgagaagaattgggcgttccaaaccagaacgaattgtgtatgtatcttgtaac
cctgatacatttgcaactgatataaaagaacttgaacaatttgactatgagttgaaaata
gtacaacctgttgacctatttcctcatacagttcatgttgagtgctgtgcgttgcttgaa
ctagctgactaa
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