Metabacillus litoralis: KDJ21_003100
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Entry
KDJ21_003100 CDS
T08411
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mlit
Metabacillus litoralis
Brite
KEGG Orthology (KO) [BR:
mlit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mlit03009
]
KDJ21_003100 (rlmD)
Enzymes [BR:
mlit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KDJ21_003100 (rlmD)
Ribosome biogenesis [BR:
mlit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KDJ21_003100 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Met_10
Methyltransf_25
MTS
PrmA
Methyltransf_15
Cons_hypoth95
Methyltransf_11
RrnaAD
TRM
N6_Mtase
Methyltransf_12
PCMT
UPF0020
Methyltransf_32
N6_N4_Mtase
TPMT
Methyltransf_4
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
UHA60734
LinkDB
All DBs
Position
complement(613079..614476)
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AA seq
465 aa
AA seq
DB search
MAKIQAPVMKNEYYDVTFEDLTHEGAGVAKVEGFPIFVENALPDERAKIKVIKVNKGFAF
GRLIELHEQSKNRIDAPCPIYSQCGGCQLQHLSYEGQLDFKRKQVEQVLARIGKLDLNQV
TVHPTLGMENPWNYRNKAQVPVGEREGGLVAGFYQKRSHDIIDMERCLIQQAENDDVVQA
VKTICEKHGIRAYNEEKHKGWLRHIMVRYGLVTKEIMVVFVTRTADFPHKNEVITEITNQ
LPQVKSVVQNINNKKTNVIFGDETNVLWGEEYIYDKIGDVKFAISARSFYQVNPEQTKVL
YEKALEYAELTGEEFVIDAYCGIGTISLFLAQKAKRVFGVEIVPEAIEDAKRNAELNGIS
NAEFAVGEAEVVIPEWYKQGNQADVIVVDPPRKGCDEALLKTILDMKPKKVVYVSCNPGT
LARDLQVLELGGYKTVEVQPVDMFPHTTHVEVVSQMILKEEAGSR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaattcaagcacctgttatgaaaaatgaatattacgatgtgacctttgaggac
ttaacgcatgaaggtgcgggtgtcgcaaaggtggaaggctttccgatctttgttgaaaat
gcactgccggatgaacgagcaaaaataaaagtaatcaaagtaaacaaaggcttcgcgttc
ggacgactaattgagctccatgaacaaagtaaaaaccgaattgatgcaccttgcccaatc
tattctcaatgcgggggctgccagcttcagcatcttagctatgaaggacagcttgatttt
aaacgaaaacaagtggagcaggtccttgctagaataggcaaactagatttaaaccaagta
actgtacatccgactctaggaatggagaatccttggaattaccgaaacaaagctcaggtt
ccagtaggtgaacgtgagggcggtctagtagctggcttttatcaaaaaagaagccatgac
atcattgatatggaaagatgtctcattcagcaagctgagaacgatgacgttgttcaagcg
gtgaaaaccatttgtgaaaaacatggcattcgtgcttataacgaagaaaagcataaaggc
tggcttcgtcatattatggttcggtatggacttgtgacaaaggaaatcatggttgtattt
gtaacaagaacggctgactttccacataaaaatgaggttatcactgaaataacaaatcaa
ctaccgcaagtgaagtcagttgtgcaaaatattaataacaaaaaaacaaatgttatcttt
ggcgatgaaacaaatgtgctttggggagaagagtatatttacgacaaaattggcgacgta
aaatttgccatatctgcacgctctttttatcaagtaaacccagagcaaacaaaggtgcta
tatgaaaaagcattagaatacgctgaattaacaggtgaagaatttgtaatcgatgcttac
tgcggaattgggacgatttctttgtttcttgcccaaaaagccaagagagtttttggtgtg
gaaatagttccagaagcaatagaagatgctaagcgaaatgcagagctaaacggcatttct
aatgcagagtttgcagttggtgaagcagaagttgttattcctgaatggtacaagcaaggc
aatcaggcagacgtgattgtcgtggatcctccgcgtaagggctgtgatgaagcattgttg
aaaacaatcttggatatgaaaccaaagaaggttgtttatgtttcatgtaatcctggaacg
cttgcgagggatttgcaggtgttggagttaggtggatataagacggttgaggtgcagcca
gtggatatgtttccgcatacgacgcatgttgaggtagtatcgcagatgattttaaaagaa
gaagcaggttcccggtaa
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