Metabacillus litoralis: KDJ21_022120
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Entry
KDJ21_022120 CDS
T08411
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mlit
Metabacillus litoralis
Pathway
mlit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDJ21_022120 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlit03019
]
KDJ21_022120 (recQ)
03400 DNA repair and recombination proteins [BR:
mlit03400
]
KDJ21_022120 (recQ)
Enzymes [BR:
mlit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDJ21_022120 (recQ)
Messenger RNA biogenesis [BR:
mlit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDJ21_022120 (recQ)
DNA repair and recombination proteins [BR:
mlit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KDJ21_022120 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Sigma70_r4_2
TRAPP
PSII_Pbs27
GerE
DUF4911
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UHA59452
LinkDB
All DBs
Position
complement(4375897..4378035)
Genome browser
AA seq
712 aa
AA seq
DB search
MLQKAEKLLKDYFGYSSFRKGQVDIIRNILEGHDTLAIMPTGGGKSICYQVPALLMDGIT
VVISPLISLMKDQVDALTSVGIPSTYINSSLSIPDINERIAELRDGSYKIVYIAPERLET
NSFRDLLLTLNISMVAVDEAHCISQWGHDFRPSYRSINKMIMDLSTKPIVVALTATATKE
VIADICHLLDLSEEDSFVTGFSRENLTFNVVKGENKRDYIKKYIKANKNEAGIIYAATRK
EVDELSQFLKKSGFKAGKYHAGMSEQERAQQQDQFLYDEFDVMVATNAFGMGINKSNIRY
VIHHNLPKNIEAYYQEAGRAGRDGEPSECTILFAGQDIQLQKFLIEQTSLSYEKKVHEYQ
KLQQMVDLCHTEKCLQSYIVEYFGEENAEADCGNCMNCKDTREKIEVTTEALMVFSCVKR
MNEKFGKTLVAQVLKGSNNKRISQMGFQKLSTYGLMKNKTEKQIVEFIDFLIAEGYLSLT
NAQYPVIELSKKGLLVLVDKTPVFKKEKLVISSIESDDELFEVLKNIRRELASEHRVPPY
IIFSDSSLKDMSNKCPINESEFLEVKGVAQTKLERYGQPFIKAICDYMKIEQEPLNQIMI
QKSHSQISVDKTPSHLVTYQLYMDGLKINEISIQRGITEITVQNHIIRAVEEGQPIEWRS
IFTEEQENLIIEKIKEMNTELLKPLKEVLPASINYFQIKAAICKLNLGVISS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaaaagctgaaaagttgttaaaagattatttcggttattcatcgtttcgaaaa
ggccaagtggatattattcgtaatatattagagggacatgacacactagccattatgcca
acaggtggtgggaaatctatctgttatcaagtgcctgcattattgatggatggtattact
gttgtcatatcgccactaatttctttaatgaaagatcaagtagatgctttaacaagtgtt
ggaataccatcaacttatataaatagcagtctttccattccagatataaatgaacgaatc
gcagagctaagagatggctcttataaaattgtttatattgcacctgagagactagaaacg
aattcgtttcgagatctcttattaacgttaaatatttctatggtagcagtagatgaggca
cactgtatatctcaatgggggcatgattttcgccctagttacaggtctataaataagatg
ataatggacctttctactaaaccaattgtcgttgcccttacagcaacagcaacaaaagaa
gtaatagctgatatttgtcatttgttagatttatcagaggaggattcttttgttactggt
ttttcccgagaaaacctaacatttaatgtagttaaaggtgaaaacaagcgcgactatatt
aaaaaatatatcaaagcaaataaaaatgaagctggcattatttatgctgctactcgaaaa
gaagtagatgaattatctcaatttcttaaaaaaagtggtttcaaggcagggaaatatcat
gctggtatgtcagaacaagagcgagcgcaacagcaggatcaatttttatatgacgagttt
gatgttatggttgcaacaaacgcttttggtatgggaataaacaaatccaatattcggtat
gtcattcatcataatttacctaaaaatatagaggcttactaccaggaagcaggccgtgct
gggcgggatggggagcctagtgaatgtacgattctgtttgctggacaagatatacagctt
caaaaattcttaatagaacaaacatctctaagttatgaaaagaaggttcatgaatatcaa
aaattacagcaaatggtagatctctgtcatacagaaaaatgtttacaatcttatattgtt
gaatattttggtgaagagaatgcggaagcagattgtggcaattgcatgaattgtaaggat
acacgagaaaaaattgaggtaacaactgaagctttaatggttttttcttgtgtgaaaaga
atgaacgaaaaattcgggaaaactcttgtagcacaagtactaaagggttctaataataag
cggatttctcagatgggatttcaaaaattatcaacctatgggttaatgaagaacaagaca
gaaaaacaaattgtagaatttattgattttttaattgcggaaggttatttatctctaaca
aatgctcaataccctgttatcgaacttagtaaaaaggggttacttgtattagttgataaa
acgccagtatttaagaaggagaaactagtgatttcatcaattgaaagcgatgatgaacta
tttgaagtactaaagaatataagaagagaacttgcttctgaacatagagtaccgccttat
attattttttctgatagtagtctaaaagacatgagtaataaatgtccgattaatgagtct
gagtttttagaagtaaaaggtgttgctcaaacaaagcttgaacgttacggacaaccattt
ataaaggcaatttgtgactatatgaaaattgaacaagagccacttaatcaaataatgata
caaaaatcacattcacaaatatcggttgataagacacctagtcatcttgttacctatcaa
ttatatatggatgggttaaagattaatgagattagtatacaacggggaattactgaaatc
actgtacaaaaccatatcattcgagcggtggaagaaggacaaccgattgaatggagaagc
atatttaccgaagaacaagagaacttaatcatagagaaaattaaggaaatgaatactgaa
ttgctaaagcccttaaaagaagtgttacctgctagcattaattattttcaaataaaagcg
gctatttgtaagttgaatctaggagtgatcagttcgtga
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