Microbacterium limosum: RYJ27_03300
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Entry
RYJ27_03300 CDS
T09965
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mliy
Microbacterium limosum
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mliy03032
]
RYJ27_03300 (topA)
03400 DNA repair and recombination proteins [BR:
mliy03400
]
RYJ27_03300 (topA)
Enzymes [BR:
mliy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RYJ27_03300 (topA)
DNA replication proteins [BR:
mliy03032
]
Prokaryotic type
DNA Topoisomerases
RYJ27_03300 (topA)
DNA repair and recombination proteins [BR:
mliy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RYJ27_03300 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WOQ70251
UniProt:
A0AAU0MI72
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All DBs
Position
673764..676472
Genome browser
AA seq
902 aa
AA seq
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MATSKKLVIVESPTKMKSIQSYLGDDYEVLSSVGHIRDLADKKDIPADLKKTSVGRYSID
IENDFEPYYVESERGRKTVAELKRALKQADELLLATDEDREGEAIAWHLLETLKPKVPVK
RMVFHEITEDAIRAAVERTRELDHDLVDAQETRRILDRLYGWDVSPVLWRKVGTGRDGAA
LSAGRVQSAATRLVVDRERERIAFVSASYWDIEAMASRDAEAFRVKLVRLDGATIARGAD
FDEAGALKRAVVVLDEAQAGELAAAVAGVGAASVTKVEAKPGTRSPYAPFTTSTMQQEAG
RKLSMSAKHAMSVAQRLYEKGYITYMRTDSQSLSTQAIEAARTQAVELYGKDAVPLKPRV
YKSKSKNAQEAHEAIRPSGETFRTPSSVASGLDRDELRLYDLIWKRTVASQMADAKYETT
TVTLEVEAGERRAEFTASGTVYTFKGFLEAYEEGTDEKRGDADKGENQSLPQLTAGDEVA
MADVEPKGHHTTPKPRYTEASLVKALEEKGIGRPSTFASIIDTILDRGYVTKRGQALVPS
WIAFSVVRLLEENFPDLVDYDFTAALEDDLDAIARGEQHRVEWLRAFYFGDEGHVGLRNV
VDNLGEIDARELNSRPVSENVTLRIGKYGPYLEVVDPEKPDADPRRVNIPEDLAPDELTP
AKAQELIDAPVAGDRVLGEHPETGKLIVVKDGRFGPYIQEVEPVDPDAVDEATGEVVDPP
KKRGAKKEAAPKPRTASLFKSMSVDTIDLDTALRLLELPRTVGTDPESGEAITAQNGRYG
PYLKKGTDSRSLESEQQIFDIDLEGALAIYAQPKYGARRASSALKEFDADPVSGKPIRIR
DGRFGAYVTDGETNATIPRGETVEDVDFERAKQLLADKRAKGPAPKRTTKRTSTRKAPAK
KS
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
ttggccaccagcaagaagctcgtcatcgttgagtctccgacgaagatgaagtcgatccag
tcgtacctgggggatgactacgaggtgctctcgtcggtcggacacatccgtgacctcgcc
gacaagaaggacatccccgccgacctgaagaagacctcggtcggtcgctactcgatcgac
atcgagaacgacttcgagccctattacgtcgagtccgagcgcggtcgcaagaccgtggcc
gaactcaagcgcgccctcaagcaggccgacgaactcctgctcgccactgatgaagaccgc
gagggcgaagccatcgcatggcacctgctcgagacgctcaagccgaaggtccccgtcaag
cgcatggtgttccacgagatcaccgaggacgccatccgcgccgccgtcgagcgcacccgc
gagctcgaccacgacctcgtcgacgcgcaggagacccgccgcatcctcgaccgcctgtac
ggatgggacgtctctcccgtgctctggcgcaaggtggggacgggccgcgacggagcggcc
ctctccgccggccgcgtgcagtccgcggcgacgcgtctcgtcgtcgatcgcgagcgcgag
cgcatcgccttcgtgtcggcgtcgtactgggacatcgaagcgatggcgagccgggatgcc
gaggcgttccgcgtcaagctcgttcgcctcgacggggcgaccatcgcccgcggtgcggac
ttcgacgaggccggcgccctcaagcgggccgtggtcgtgctcgacgaggcgcaggcgggc
gaactcgccgccgcggtcgcgggcgtcggcgcggcatccgtcaccaaggtcgaggccaag
ccgggcacacgcagcccctacgctcccttcacgacgtcgacgatgcagcaggaggccggc
cgcaagctctcgatgagcgccaagcacgccatgagcgtcgcgcagcgcctctacgagaag
ggctacatcacctacatgcgcaccgactcgcagtcgctgtcgactcaggcgatcgaggcg
gcgcgcacgcaggccgtggagctctacggcaaggatgcggtgccgctgaagccgcgcgtg
tacaagagcaagagcaagaacgcgcaggaggcgcacgaggcgatccgtccctcgggcgag
accttccgcactccctcgtccgtggcgagcgggctcgaccgcgacgagctgcggctctac
gacctgatctggaagcgcaccgtcgcgagccagatggccgacgcgaagtacgagaccacc
accgtgaccctcgaggtcgaagcgggagagcggcgggccgagttcacggcatccggcacc
gtctacaccttcaagggcttcctcgaggcctacgaggagggcaccgacgagaagcggggc
gacgccgacaagggcgagaaccagtcgctgccccagttgaccgccggcgacgaggtcgcg
atggccgacgtggagccgaagggccaccacaccacgcccaagccgcgctacaccgaggca
tccctggtcaaggcgctcgaggagaaggggatcggtcgtccctcgacgttcgcgagcatc
atcgacacgatcctcgaccgcgggtacgtcaccaagcgcggtcaggcgctcgtgccgagc
tggatcgcgttcagcgtcgtgcggctgctcgaggagaacttccccgacctcgtcgactac
gacttcaccgcggccctcgaggacgatctcgacgccatcgcgcggggcgagcagcaccgc
gtcgagtggctgcgcgccttctacttcggcgacgagggccacgtcggcctccgcaacgtc
gtcgacaacctgggcgagatcgacgcgcgcgagctgaactcgcgtcccgtgagcgagaac
gtcacgctgcgcatcggcaaatacggtccgtacctcgaggtcgtcgaccccgagaagccc
gacgccgacccccgccgggtcaacatccccgaggacctggctcccgacgagctcacgccc
gccaaggcgcaggagctcatcgacgcgccggtcgcgggagaccgcgtgctcggagagcac
cccgagacgggcaagctcatcgtcgtcaaggacggccggttcggcccgtacatccaagag
gtcgagcccgtcgaccccgacgccgtcgacgaggccacgggtgaggtcgtcgacccgccg
aagaagcgcggggccaagaaggaagcggcgcccaagccgcggacggcgtcgctgttcaag
agcatgtcggtcgacacgatcgacctcgacaccgccctgcggctgctggagctgccccgc
accgtgggcaccgaccccgagtcgggcgaggccatcacggcgcagaacggccggtacggc
ccgtacctgaagaagggcaccgactcgcggtcgctggagagcgagcagcagatcttcgac
atcgacctcgagggcgcgctcgcgatctacgcgcagccgaagtacggggcccgtcgtgcg
tcgagcgcgctcaaggagttcgatgcagaccccgtgagcggcaagccgatccgcatccgc
gacggccgattcggggcgtacgtcaccgacggcgagacgaatgcgaccatcccgcgcggc
gagacggtcgaggacgtcgacttcgaacgcgcgaagcagctgctcgccgacaagcgcgcg
aagggcccggcccccaagcgcacgaccaagaggacgagcacgcgcaaggcgccggcgaag
aagtcatga
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