Microbacterium limosum: RYJ27_04515
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Entry
RYJ27_04515 CDS
T09965
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mliy
Microbacterium limosum
Pathway
mliy03030
DNA replication
mliy03430
Mismatch repair
mliy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RYJ27_04515 (dnaE)
03430 Mismatch repair
RYJ27_04515 (dnaE)
03440 Homologous recombination
RYJ27_04515 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mliy03032
]
RYJ27_04515 (dnaE)
03400 DNA repair and recombination proteins [BR:
mliy03400
]
RYJ27_04515 (dnaE)
Enzymes [BR:
mliy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RYJ27_04515 (dnaE)
DNA replication proteins [BR:
mliy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RYJ27_04515 (dnaE)
DNA repair and recombination proteins [BR:
mliy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RYJ27_04515 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF655
Motif
Other DBs
NCBI-ProteinID:
WOQ70477
UniProt:
A0AAU0MIV0
LinkDB
All DBs
Position
941085..944600
Genome browser
AA seq
1171 aa
AA seq
DB search
MAADSFVHLHVHSEYSMLDGAARVGPMVQEAAKQGMPALAVTDHGNTFGAFEFYKAAKDA
GVKPIIGIEAYVTPGTHRADKARVRWGSPDQADDDVSGAGAYTHMTLLSHSTQGMHNLFR
LSSKASIEGYYFKPRMDRELLQTYSSGLIATTGCPSGEVQTRLRLGQYDAARAAAAEFQD
IFGKENYFAEIMDHGLGIERRVMADLLRLAKDLDIPLVATNDLHYTHQHDATSHAALLCV
QSGSTLDDPKRFKFDGDGYYLKSAAEMRQVFRDHPEACDNTLLIAERCQSEFNTSANYMP
RYPVPDGETEQSWFVKEIEKGLQYRYPGGVPDEVRRQAEYETDVIVQMGFPGYFLVVADF
INWAKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLQHGLIFERFLNPDRVSMPDFDVDFD
DRRRGEVIQYVTEKYGDDRVAQIVTYGTIKAKQALKDASRVLGFPFGMGEKLTKAMPPAV
MGKDMPLDGMFDPQHPRYKEASEFRTLIETDPESKTVFDTAVGLENLKRQWGVHAAGVIM
SSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIIDDALDNIRANRN
ENLVLEDLALDDAASYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPG
PMGVNSHINYALRKNGQQEIEPIHPELAEPLADILDTTYGLIVYQEQVMAVAQRVAGYSL
GQADLLRRAMGKKKKSELDKQKEIFFGGMTERGFSDAAQQTLWKVLESFADYAFNKAHTA
AYGLVSYWTAYLKAHYPAEYMAALLTSVGDSKDKLAIYLNECRRMGIKVLPPDVSQSIRY
FAAVGDDIRFGLGAIRNVGANVVEAIVAARRETEFTTFHDFLQRVPLQVANKRTIESLIK
AGAFDSTGATRRALLEVHEDAVEQVVLDKRREANGEVGFDFDSLWDEPQTAQKVPQRPEW
TKKDKLAFEREMLGLYVSDHPLAGLEVPLAKHASLGIHELLASDDLSDGEQVTIAGLVTS
AQHRVAKSSGNPYGMITVEDFNGEITVMFMGKTYQEFQPILQADSILVVRGRISRRDDGM
NLHAVSAMAPALDSFDASGALDLVIPEHRATQPVIGDLAEILARHGGSTEVRLTLTKGQV
AKVFEVPHPVKISADLYGELKSLLGPGCLGG
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccgactccttcgtacatctgcacgtccacagcgagtactcgatgctcgacggt
gcggcccgcgtgggcccgatggtgcaggaggcggccaagcaggggatgcccgcgctggcg
gtgaccgaccacggcaacaccttcggcgccttcgagttctacaaggccgcgaaggatgcc
ggcgtcaagccgatcatcggcatcgaggcctacgtgacacccggcacgcaccgcgcggac
aaggcccgcgtgcggtgggggagcccggaccaggccgacgacgacgtgtcgggtgccggc
gcctacacgcacatgaccctgctgtcgcactcgacccagggcatgcacaacctgttccgc
ctctcctccaaggcgagcatcgagggctactacttcaagccgcgcatggaccgcgagctg
ctgcagacctattcgtccggactcatcgccacgacggggtgcccctccggcgaggtgcag
acccgactgcggctcgggcagtacgacgcggcgagggcggcggccgccgagttccaggac
atcttcggcaaggagaactacttcgccgagatcatggaccacggcctcgggatcgagcgc
cgcgtcatggcagatctgctgcgcctggccaaggatctcgacatcccgctcgtcgcgacg
aacgacctccactacacgcaccagcacgacgccacgagccacgcggcgctgctctgcgtg
cagtcgggttccaccctcgacgatcccaagcggttcaagttcgacggcgacggctactac
ctgaaatcggccgccgagatgcggcaggtcttccgcgaccaccccgaggcgtgcgacaac
accctgctgatcgcagagcggtgccagagcgagttcaacaccagcgcgaactacatgccc
cggtaccccgtgcccgacggtgagacggagcagtcctggttcgtcaaggagatcgagaag
ggcctgcagtaccgatacccgggcggggtgccggacgaggtgcgccgtcaggcggagtac
gagaccgacgtcatcgtccagatgggcttcccgggatacttcctcgtcgtggccgacttc
atcaactgggccaaggacaacgggatccgcgtcggtccggggcgcggctcgggcgccgga
tccatggcggcgtacgcgatgcgcatcacggatctggacccccttcagcacggcctgatc
ttcgagcgcttcctcaaccccgaccgcgtctccatgcccgacttcgacgtcgacttcgac
gaccgtcgccgcggcgaggtcatccagtacgtcaccgagaagtacggcgacgaccgggtg
gcccagatcgtcacgtacggcacgatcaaggcgaagcaggcgctcaaggacgccagccgc
gtgctcggcttccccttcggcatgggggagaaactcacgaaggcgatgccgcccgccgtg
atgggcaaggacatgcccctcgacggcatgttcgacccgcagcatccgcgctataaggag
gcgtcggagttccgcaccctcatcgagaccgatcccgagtccaagacggtcttcgacacc
gccgtgggactggagaacctcaagcggcagtggggcgtgcacgccgccggcgtcatcatg
tcgagcgagccgctgatcgacatcatcccgatcatgaagcgggagcaggacggccagatc
gtcacgcagttcgactacccggcgtgcgagtcgctcggcctgatcaagatggattttctc
gggcttcgcaacctcacgatcatcgacgacgccctcgacaacatccgcgccaaccggaac
gagaacctcgtcctggaggatctcgctctcgacgacgccgcgtcgtacgaacttctcgcg
cggggcgacaccctcggcgtcttccagctcgacggcggaccgatgcgatcgctgctgcgc
ctcatgaagcccgacaacttcgaggacatctccgccgtgctcgcgctgtaccggccgggc
ccgatgggcgtgaactcgcacatcaactacgcgctgcgcaagaacggccagcaggagatc
gagccgatccaccccgagctcgccgagcccctcgccgacatcctcgacaccacctacggc
ctgatcgtgtaccaggagcaggtcatggcggtggcacagcgcgtcgcggggtactcgctc
ggacaggccgatctgctgcgccgcgcgatggggaagaagaagaagtccgagctcgacaag
cagaaggagatcttcttcggcggcatgaccgagcggggcttctcggatgccgcgcagcag
accctctggaaggtgctggagtcgttcgcggactacgccttcaacaaggcgcacacggcg
gcctacggtctcgtgtcctattggacggcatacctcaaggcgcactatcccgccgagtac
atggccgccctcctgacgagcgtgggggactcgaaggacaagctcgcgatctacctcaac
gagtgccgccgcatgggcatcaaggtgctgccgccggatgtcagccagtcgatccgctac
ttcgccgccgtcggcgacgacatccgcttcggcctcggggccattcgcaacgtcggtgcc
aacgtcgtcgaggcgatcgtcgcggcccggcgggagacggagttcacgaccttccacgac
ttcctccaacgcgttccgctgcaggtcgccaacaagcgcacgatcgagtcgctcatcaag
gccggcgccttcgactccaccggggcgacgcgtcgggcgctgctggaggtgcacgaagac
gccgtcgagcaggtcgtgctcgacaagcgccgtgaggccaacggcgaggtcggcttcgac
ttcgacagcctgtgggatgagccgcagaccgcccagaaggtgccccagcggcctgagtgg
acgaagaaggacaagctcgcgttcgagcgcgagatgctcggactgtacgtctcggatcac
ccgctggccgggctggaggtgccgctcgcgaagcacgcttcgctcggcatccacgagctg
ctggcatcggacgacctctcggacggggagcaggtgacgatcgccggcctcgtcacgagc
gcccagcaccgcgtcgccaagtccagcggcaatccgtacggcatgatcaccgtcgaggac
ttcaacggcgagatcacggtcatgttcatgggcaagacgtaccaggagttccagccgata
ctgcaggccgattcgatcctcgtggtgcgcgggcggatctcgcgtcgcgacgacgggatg
aacctgcacgccgtgtcggcgatggcgccggcactcgactcgttcgacgcgtcgggtgcg
ctcgacctcgtcatccccgagcatcgagcgacacagcccgtcatcggcgacctcgccgag
atcctcgcgcggcacggggggtccaccgaggttcggctcacgctcacgaagggccaggtc
gcgaaggtcttcgaggtgccgcaccccgtgaagatctccgccgacctgtacggggagctc
aagtcgctgctcggcccggggtgcctcggggggtga
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